Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1775 120 3e-22 seq1422 107 2e-18 seq1110 107 2e-18 >seq1775 Length=332822 Score = 120 bits (132), Expect = 3e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||||||| | |||| || || || ||||||||||| || |||| |||||| | Sbjct 274987 ACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCTGCCAAAGTCCGGCC 274928 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| ||||| || || || ||||||||||||| || | | ||||| Sbjct 274927 ATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTT 274868 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||||| ||||||| | | | || | | || | ||||| || | ||| | Sbjct 274867 GTCCTGAATTTTCTGTTTGA-CATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAA 274809 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 |||| |||||||| || ||||| || || || |||||||| Sbjct 274808 TGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCATTTT 274769 >seq1422 Length=277306 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||||||||| ||||||| ||| || |||| || |||||||| ||||| || Sbjct 271514 CTCCTTCTGAATATTGTAGTCAGCCAAAGTACGACCGTCCTCGAGCTGCTTGCCAGCAAA 271455 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || |||||||| || | || | || ||||||||| ||| ||||| || | | Sbjct 271454 GATCAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGGATCTTTTGCTTTACATT 271395 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || | ||||| || | ||| || || || || || | |||||||| Sbjct 271394 GTCGATCGAATCCGAGGGCTCCACGTCCAGCGTAATCGTCTTACCAGTCAAAGTCTTTAC 271335 Query 43172 AAAGATTTGCAT 43183 ||| |||||||| Sbjct 271334 AAAAATTTGCAT 271323 >seq1110 Length=486086 Score = 107 bits (118), Expect = 2e-18 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||||||||| ||||| || || || | || | || || || ||||| ||||| || | Sbjct 256292 CCTTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 256233 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | ||||||||||| | ||| | || ||||||||| |||||| || || | | | | Sbjct 256232 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTA-CATTG 256174 Query 43114 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 || | |||| || |||||| || | ||| ||||| |||||||| | |||||| ||| Sbjct 256173 TCAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACA 256114 Query 43173 AAGATTTGCAT 43183 || || ||||| Sbjct 256113 AAAATCTGCAT 256103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571802125186200