Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1526 158 1e-33 seq368 87.8 2e-12 >seq1526 Length=132622 Score = 158 bits (174), Expect = 1e-33 Identities = 436/664 (66%), Gaps = 7/664 (1%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| || |||| ||| ||||||||||||| || || ||||||| || ||||| Sbjct 118395 TTTTGGTACTCACCAACCTTCTTTTCAAAGAAGTTAGTCTTTCCTTGCAAGGAAATCAAG 118454 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063 ||||| ||||| |||||||| | | | || |||| ||| || | | ||| Sbjct 118455 TCCATGAAATCGAAAGGATTGTCTACATTGTAAAATTTGGGGCACTGCAGGGCAACCAAC 118514 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 || | ||| || |||||||| || ||||| ||| | | | || ||||| || || || Sbjct 118515 AAGCGATCAGCAACAAATTCAATGTACTGGCACATGAGAGCGCAATTCATGCCAATCAAA 118574 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183 ||| || | || || || | || | | ||| || || || ||||| | || || Sbjct 118575 GCAACGGGCAAGGCCTCCGTCAGGAATTCCTGTTCAATCTTGACAGCTTCCGTAATGATG 118634 Query 16184 TCTCTTACTACACTATTTAACGGAGG-GTTTAAT--AAGTGTTTAAACATTATACAAGCA 16240 | ||| || | ||| | || | | ||||| | || | | ||| ||| Sbjct 118635 TGAGTTATAGTGGCATCAGAAGGACGAGTGTGACGCAAGTGCCTGAATAACAAACAGGCA 118694 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 ||||||||||| | |||||||| | || |||| || || || || || | ||| ||| Sbjct 118695 AAATCACAATGAAGACCTTCGTCACGGCTGATTAGTTCATTGGAGAAGGTCAAACCGGGC 118754 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || | || || || || | ||| || || || ||||||||||| |||||||| |||||| Sbjct 118755 ATCAACCCGCGCTTCTTCAACCAGAAAATGGCAGCAAATGAACCGGAAAAGAAGATACCT 118814 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccat 16420 || || || ||||| ||||| | || || || | ||| ||| | |||| ||||| Sbjct 118815 TCCACGGCAGCAAAAGCAACAAGGCGTTCTCCAAAACAGCTAGTTTGATTTTCAATCCAA 118874 Query 16421 tttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAA 16480 ||||||| | | | || | |||||| ||| | || || ||||| | ||| Sbjct 118875 CGCATAGCCCAGTCTCCCTTCTTGCGAACACAAGGGATGGTGTCAATGGCATTGA--AAA 118932 Query 16481 TAAtttttttCTTTGCT--ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | ||| || || || ||| || ||||| || || | | |||||||| | Sbjct 118933 GGAATTTACGCTCAACTGGGTCACGAATGTAGGTATCAATGAGGAGAGAGTACATTTCAG 118992 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 ||||| || || || || || || || |||||||| | |||||| | | ||| | Sbjct 118993 CGTGAATGTTTTCAATCATGATTTGGAACCCGTAAAAGCAACGAGCTTCTGGAACTTGAA 119052 Query 16599 CTTC 16602 |||| Sbjct 119053 CTTC 119056 >seq368 Length=262043 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 16250 TGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCT 16309 |||| || ||||||| || || | |||||||||||| | ||||| ||||||| || Sbjct 28302 TGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGACCAGGCATTAAACCG 28361 Query 16310 CGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCG 16369 || || || | |||||| || | | ||||| ||||| || || || ||||||||||| Sbjct 28362 CGCTTCTTGAGCCAAAAGATGGAGCAGAATGAGCCAGAGAAAAAAATGCCTTCAACTGCA 28421 Query 16370 GCAAATGC 16377 ||||| || Sbjct 28422 GCAAAGGC 28429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462499483269000