Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq1525 105 5e-18 >seq1525 Length=339361 Score = 105 bits (116), Expect = 5e-18 Identities = 276/426 (65%), Gaps = 19/426 (4%) Strand=Plus/Plus Query 20207 ACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTG 20266 ||||| |||| |||||||||| || || || || ||||||||| | ||||| || || Sbjct 147215 ACCGTGAAGAATGGGATTTGGGCCCAGTTTACGGGTTTCAATGGCGTCATTTCGGGGCCA 147274 Query 20267 AATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTA 20326 | || || |||||| |||| | || || |||||||| || ||| | ||| || | Sbjct 147275 AGTACGTCGACATGCACACCGACTACACCGGTCAAGGAGTCGACCAACTTCAAGCCGTCA 147334 Query 20327 TTAA---------------TTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTAT 20371 || | |||||||| |||| | |||| || | | Sbjct 147335 TTGACACCNNNNNNNNNNNNNNNNNNNNNACGAACCCTTACGATCGTCGAATCATCATGT 147394 Query 20372 GCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCC 20431 ||| ||||| | ||| || ||| ||||| |||||||| || || ||| | || | Sbjct 147395 CCGCTTGGAATCCGGCTGATTTGAATTTGATGGCGTTGCCTCCTTGCCACATGTTTTGTC 147454 Query 20432 AATTTTACGTTGCTAATAATG--AATTGTCGTGTCAAATGTATCAACGATCCGCTGATAT 20489 ||||||| ||| || | | |||||||||| ||||| || || |||||| Sbjct 147455 AATTTTATGTTC--AAGACGGGAAATTGTCGTGCTTGATGTACCAGAGAAGTTGTGATAT 147512 Query 20490 GGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 || | || || |||||||||||||| |||| || | || ||| |||||||| || Sbjct 147513 CGGCTTAGGGGTGCCTTTCAATATTGCTTCTTATTCGTTACTGACGATCATGATTGCTCA 147572 Query 20550 TGTTACAGATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCT 20609 ||| || | | || || |||| || || | ||| || || || | || |||||| Sbjct 147573 TGTCACTGGTCTACAACCGGGAGAATTCATTCACTGTATGGGTGATACCCACATTTACTC 147632 Query 20610 TAATCA 20615 ||||| Sbjct 147633 CAATCA 147638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399173467155925