Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1526 170 2e-37 seq368 134 1e-26 seq811 125 7e-24 >seq1526 Length=132622 Score = 170 bits (188), Expect = 2e-37 Identities = 624/962 (65%), Gaps = 24/962 (2%) Strand=Plus/Plus Query 13816 AAGTTGTTATTTATTCAACTTTATAATATTCAATAAAAACTAAAAATCAACATCTAACGA 13875 || ||||| || ||||| ||| | || || ||| | ||||| ||| |||| | | Sbjct 118306 AAATTGTTCTTAATTCATTTTTTTTATTTTT--TAAGTATTAAAAGTCAGCATCAAGAGT 118363 Query 13876 AAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTT 13935 |||| || || |||| || || || || ||||| || |||| ||| | || Sbjct 118364 GAAAATCTTTTC----TTGT--GACATGACACCAGCCTTTTGGTACTCACCAACCTTCTT 118417 Query 13936 TTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGT 13995 ||||||||||||||| || |||| || || || ||||| ||||| || ||||| || Sbjct 118418 TTCAAAGAAGTTAGTCTTTCCTTGCAAGGAAATCAAGTCCATGAAATCGAAAGGATT-GT 118476 Query 13996 TGACATAA-ACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAA 14054 |||| | | ||| || || | | | || | ||| |||| || |||| Sbjct 118477 CTACATTGTAAAATTTGGGGCACTGCAGGGCAACCAACAAGCGATCAGCAACAAATTCAA 118536 Query 14055 TATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTA 14114 | || || |||| | | | |||||||| || || | || || | | || | Sbjct 118537 TGTACTGGCACATGAGAGCGCAATTCATGCCAATCAAAGCAACGGGCAAGGCCTCCGTCA 118596 Query 14115 AAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAG 14174 ||||| | ||| || ||||| || | || || || ||| | ||| ||||| Sbjct 118597 GGAATTCCTGTTCAATCTTGACAGCTTCCGTAATGATGTGAGTTATAGTGGCATCAGAAG 118656 Query 14175 GAGGATATTTTAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCAT 14231 || || | | || | || | ||||| ||||||||||||||||| || || | Sbjct 118657 GACGAGTGTGACGCAAGTGCCTGAATAACAAACAGGCAAAATCACAATGAAGACCTTCGT 118716 Query 14232 CTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACC 14291 | | || || ||||| || || || || || || |||||||| || || || || |||| Sbjct 118717 CACGGCTGATTAGTTCATTGGAGAAGGTCAAACCGGGCATCAACCCGCGCTTCTTCAACC 118776 Query 14292 AAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTA 14351 | || || ||||| ||||| ||||||||||| || || || || |||||||| || | | Sbjct 118777 AGAAAATGGCAGCAAATGAACCGGAAAAGAAGATACCTTCCACGGCAGCAAAAGCAACAA 118836 Query 14352 ATCGTTCTCCAAACGATGCTTTTTTG-TTCGATATCCATTTTCTAGCCCATTCAGAtttt 14410 ||||||||||| | ||| |||| || ||||| ||||||| || || Sbjct 118837 GGCGTTCTCCAAAACA-GCTAGTTTGATTTTCAATCCAACGCATAGCCCAGTCTCCCTTC 118895 Query 14411 tttttAATAAAATCCATTGTTTCAATAGCATT--AAATAAATGTTCCTTCTCTTTAGTAC 14468 || || | || || || ||||| ||||| ||| ||| | | || | || | Sbjct 118896 TTGCGAACACAAGGGATGGTGTCAATGGCATTGAAAAGGAATTTACGCTCAACTGGGT-C 118954 Query 14469 TTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTA 14528 | |||||| |||||||| || | |||||||||| ||| |||||||| || | Sbjct 118955 ACG-AATGTAGGTATCAATGAGGAGAGAGTACATTTCAGCGTGAATGTTTTCAATCATGA 119013 Query 14529 TCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCG 14587 | || || || ||||| || | |||||||| ||| || || || | ||| | Sbjct 119014 TTTGGAACCCGTAAAAGCAACGAGCTTCTGGAACTTGAACTTCTTGTGCGAAA-CGAGTA 119072 Query 14588 GCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATA 14647 |||| |||||||| || ||||||||| || ||||| || ||||| | || | Sbjct 119073 ACCAAGTTTTCATTGACAATACCATCAGAGGCAGCAAAGAAAGCCAAAACACGAGAAACA 119132 Query 14648 AAGTATTGCTCTTCATTGCTGAGTTTT---TTCCAATCGGCTAAATCCTTAGAAAGATCT 14704 ||| || | || || || | | ||| | ||||| || ||||| ||||| || Sbjct 119133 AAGAATCGTTCATCGTTAGTCAACTTTTCGTCCCAATGTTTTATGTCCTTGGAAAGGTCA 119192 Query 14705 ACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTA 14764 ||||| || | ||||| || ||| |||| || || || | | ||| || || | | Sbjct 119193 ACTTCTTCGGCAGTCCAGAAGGAAGCTTCAGCCTTCTTGTAGAATTGCCAAATATCGTGA 119252 Query 14765 TA 14766 || Sbjct 119253 TA 119254 >seq368 Length=262043 Score = 134 bits (148), Expect = 1e-26 Identities = 368/552 (67%), Gaps = 14/552 (3%) Strand=Plus/Plus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 |||||||| || || | ||||| || | |||||||| ||||||||||| ||| Sbjct 28287 CACGCAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGA 28346 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAA 14322 || ||||| || || || || || | |||||| | || ||| |||||| || || || || Sbjct 28347 CCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGA-TGGAGCAGAATGAGCCAGAGAAAAA 28405 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA--TGCTTTTTTGTTC 14380 || || |||||||||||||| || | | |||||| | | || | | | || Sbjct 28406 AATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGGATC 28465 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 | ||| || |||||| | | |||||| | | || || || || |||||| Sbjct 28466 G--CACCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCA 28523 Query 14441 TTAAATAAATGTTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA- 14497 | || ||| |||||||| | || ||| || || || ||||| | |||| | Sbjct 28524 CGTAGTAGATGGTCCTTCTCAATCGCGTCTTTG--ATATACGTGTCAATCA-AAAGCGAG 28580 Query 14498 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14557 |||| ||| |||||||| || || || || || ||||| || ||||| || | ||| ||| Sbjct 28581 TACACTTCCGAGTGTATATTCTCGATTGCGATTTGAAACCCGTAAAAGCAGCGAGCCTCT 28640 Query 14558 GACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14616 | | || || || | |||||| | ||| | ||||||||| || || || ||||| Sbjct 28641 GGCACCTGCACTTCGTTGCTAAAAT-TCATGGCTAGATTTTCATTCACGATGCCGTCACT 28699 Query 14617 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTT 14676 ||| ||||| || || | | | ||||| || || |||| | | |||| | Sbjct 28700 AGCAGCAAAGAAAGCGAGCACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGGCTAGC 28759 Query 14677 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGC 14736 |||||| | ||| | ||||| | ||| ||| ||||||| ||| ||| |||| Sbjct 28760 CCAATCTTTCAGATCGTGCACCAGATCGAGTTCCTCAGCTGTCCAGAAAGAAGCTTCAGC 28819 Query 14737 TTTTTTATACAT 14748 ||| || ||||| Sbjct 28820 TTTCTTGTACAT 28831 >seq811 Length=1194 Score = 125 bits (138), Expect = 7e-24 Identities = 217/312 (70%), Gaps = 5/312 (2%) Strand=Plus/Plus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 || ||| |||||||| | ||| |||| |||| ||| ||||||||||| ||||| Sbjct 83 AACGTAAGTATCAATTAATAAAGAATACGTTTCGCTGTGAATGTTTTCCATCATAATCTG 142 Query 14533 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTA-AAATCTTTCGGCCA 14591 |||||||| ||| | | ||||| | |||| || || | || ||| | || |||| Sbjct 143 GAAACCATAGAAAAACTTCGCTTCAGCATATTGAACTTC-GTTTACAAAGTTCTCAGCCA 201 Query 14592 AATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14651 | |||||||| || || || ||| ||||||||| ||||| || || | |||||| || | Sbjct 202 AGTTTTCATTTACGATTCCGTCAGAAGCTGCAAAGAATGCTAAAATATGTTTAATGAAAT 261 Query 14652 ATTGCTCTTCATTGCTGAGT---TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTT 14708 || || || | | ||| || |||||||| | ||||| | | ||| | || Sbjct 262 ATCTTTCATCGTCATTCAGTTTGTTATTCCAATCTGTCAAATCTTGGTGCAAATCGATTT 321 Query 14709 CATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14768 | ||| | ||||| |||||||| | |||||||||| | |||| || || | || | Sbjct 322 CTTCAGCAGTCCAGAAACTAGCTTCCATTTTTTTATACCATTCCCAAATATCATGATGTT 381 Query 14769 ATATAGGAAAAA 14780 |||||||||| Sbjct 382 TGATAGGAAAAA 393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482332546522200