Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1526 125 1e-23 seq1525 104 5e-17 seq1301 89.7 1e-12 >seq1526 Length=132622 Score = 125 bits (138), Expect = 1e-23 Identities = 342/512 (67%), Gaps = 20/512 (4%) Strand=Plus/Minus Query 101854 CAAGAAGAAGGAGCAGTGGGCTATTAATTGGAT-GCAAAGCAA--TAACGATTTGGCGGA 101910 ||||||| |||| | |||||||| |||||| | ||| ||| || | ||| | || Sbjct 118898 CAAGAAG--GGAG-ACTGGGCTATGCGTTGGATTGAAAATCAAACTAGCTGTTTTGGAGA 118842 Query 101911 ACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCAT 101970 || ||||||| |||||||| || ||||| ||||||||| ||| |||| || |||| Sbjct 118841 ACGCCTTGTTGCTTTTGCTGCCGTGGAAGGTATCTTCTTTTCCGGTTCATTTGCTGCCAT 118782 Query 101971 TTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTC 102030 ||||||| | ||||| | || | |||| ||| | |||| ||||||||| | || Sbjct 118781 TTTCTGGTTGAAGAAGCGCGGGTTGATGCCCGGTTTGACCTTCTCCAATGAACTAATCAG 118722 Query 102031 TAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTG-TTG 102089 | ||||||||||||||| | || ||||| || || | || ||| ||| | Sbjct 118721 CCGTGACGAAGGTCTTCATTGTGATTTTGCCTGTTTGTTATT----CAGGCACTTGCGTC 118666 Query 102090 ATAC---CCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAAC 102146 | || || || | | || | | || | || ||||| ||| ||||||| Sbjct 118665 ACACTCGTCCTTCTGATGCCACTATAACTCACATCATTACGGAAGCTGTCAAGATTGAAC 118606 Query 102147 AAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGA 102206 | ||||| || || | || |||| ||| || | || ||||| ||| | ||| Sbjct 118605 AGGAATTCCTGACGGAGGCCTTGCCCGTTGCTTTGATTGGCATGAATTGCGCTCTCATGT 118546 Query 102207 GCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATG--GGACTAGAAAAGCA 102264 ||||||||||||||||||| || ||| | ||||||| || | | ||| Sbjct 118545 GCCAGTACATTGAATTTGTTGCTGATCGCTTGTTGGTTGCCCTGCAGTGCCCCAAA--TT 118488 Query 102265 CTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCT-CGAGAATAAGACCA 102323 || ||||| ||| || ||| ||||||||| |||||| | | || | ||||| | Sbjct 118487 TTACAATGTAGACAATCCTTTCGATTTCATGGACTTGATTTCCTTGCAAGGA-AAGACTA 118429 Query 102324 ACTTTTTTGAAAAGAGAGTCGCCGAGTATCAA 102355 |||| |||||||||| || | ||||| ||| Sbjct 118428 ACTTCTTTGAAAAGAAGGTTGGTGAGTACCAA 118397 >seq1525 Length=339361 Score = 104 bits (114), Expect = 5e-17 Identities = 172/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 35540 ATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCAC 35599 || || ||| | || |||||||| ||| | | | ||||| | ||||| |||||| Sbjct 147385 ATCATCATGTCCGCTTGGAATCCGGCTGATTTGAATTTGATGGCGTTGCCTCCTTGCCAC 147444 Query 35600 ATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGC 35659 ||| | |||||||||||| | || ||||||||||| | |||| ||| |||| Sbjct 147445 ATGTTTTGTCAATTTTATGTTCAAGACGGGAAATTGTCGTGCTTGATGTACCAGAGAAGT 147504 Query 35660 GGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATC-T 35718 | ||| |||| || || ||||| ||||||||||| || || || | ||||| ||| | Sbjct 147505 TGTGATATCGGCTTAGGGGTGCCTTTCAATATTGCTTCTTATTCGTTACTGAC-GATCAT 147563 Query 35719 GATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACA 35778 ||| || | | |||||| |||||||||| || || | | | | ||||| | || Sbjct 147564 GATTGCTCATGTCACTGGTCTACAACCGGGAGAATTCATTCACTGTATGGGTGATACCCA 147623 Query 35779 CATTTA 35784 |||||| Sbjct 147624 CATTTA 147629 >seq1301 Length=515170 Score = 89.7 bits (98), Expect = 1e-12 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 93559 ATCACATATTCGTTCACCACTTGGAATGATCCTGAAAGTACATTACGATTATACATGTTG 93618 |||| |||| || || | ||||||| || | | ||| |||| | || |||||| Sbjct 331783 ATCAAGTATTGATTGACAATTTGGAATTCACCAGCTAAAACACGACGAGTGTAAATGTTG 331842 Query 93619 GACGTTAAAGGCTCAAAGGATTCAGAGTTGCCCAGGATCTGTGCAGTGGATGCAGTAGGC 93678 || || |||||||||||| ||||| || || || || || | || || ||||| ||| Sbjct 331843 GAAGTGAAAGGCTCAAAGCATTCATTGTAACCAAGAATTTGAGAGGTAGAAGCAGTCGGC 331902 Query 93679 ATGGGAGCAACAAACATTGAATTGTGAACACCAT 93712 |||||||||| |||| ||||| ||||||||| Sbjct 331903 ATGGGAGCAAGTAACAAGGAATTACGAACACCAT 331936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989556549867575