Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1526 163 3e-35 seq811 152 5e-32 seq1301 140 3e-28 >seq1526 Length=132622 Score = 163 bits (180), Expect = 3e-35 Identities = 312/455 (69%), Gaps = 5/455 (1%) Strand=Plus/Plus Query 11338 CTTTTGATATTCACTAACTCGTCGTTCGAAAAAA-TTAGTCTTACCTTCTAGTGATATAT 11396 |||||| || |||| ||| | || || ||| || |||||||| |||| | || || Sbjct 118394 CTTTTGGTACTCACCAAC-CTTCTTTTCAAAGAAGTTAGTCTTTCCTTGCAAGGAAATCA 118452 Query 11397 ACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTA 11456 | ||||| || |||||||| | ||||||| | | ||| || | | | Sbjct 118453 AGTCCATGAAATCGAAAGGATTGTCTACATTGTAAAATTTGGGGCACTGCAGGGCAACCA 118512 Query 11457 ATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAA 11516 | || | ||| || || ||||| || ||||| |||| | | |||||||| || || | Sbjct 118513 ACAAGCGATCAGCAACAAATTCAATGTACTGGCACATGAGAGCGCAATTCATGCCAATCA 118572 Query 11517 GATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576 | | || || | || | |||| || |||| ||| || || || || || | || | Sbjct 118573 AAGCAACGGGCAAGGCCTCCGTCAGGAATTCCTGTTCAATCTTGACAGCTTCCGTAATGA 118632 Query 11577 TCGACGTTATAACTTCCTTAGATGGTGGA-TGTAAT--AAATGTTTAAACATTAAACACG 11633 | |||||| | | ||| || || ||| | || || | || | ||||| | Sbjct 118633 TGTGAGTTATAGTGGCATCAGAAGGACGAGTGTGACGCAAGTGCCTGAATAACAAACAGG 118692 Query 11634 CAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGG 11693 ||||||||||||| | ||||||||| | || ||||||||||| || || || || |||| Sbjct 118693 CAAAATCACAATGAAGACCTTCGTCACGGCTGATTAGTTCATTGGAGAAGGTCAAACCGG 118752 Query 11694 GCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTC 11753 ||||||| || || || || | ||| || || |||||||||||||| |||||||| || | Sbjct 118753 GCATCAACCCGCGCTTCTTCAACCAGAAAATGGCAGCAAATGAACCGGAAAAGAAGATAC 118812 Query 11754 CCTCCACAGCTGCAAATGCTACTACTCTTTCTCCA 11788 | ||||| || ||||| || || | | ||||||| Sbjct 118813 CTTCCACGGCAGCAAAAGCAACAAGGCGTTCTCCA 118847 >seq811 Length=1194 Score = 152 bits (168), Expect = 5e-32 Identities = 250/360 (69%), Gaps = 3/360 (1%) Strand=Plus/Plus Query 11854 TTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAA 11913 ||||| ||| ||||| || | |||| || | |||| | || || ||||| ||||| Sbjct 41 TTCTAAAGCATTAAACAATTCTGTTTTCTCAGCTTCATCTTTAACGTAAGTATCAATTAA 100 Query 11914 TAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCG 11973 |||| |||| |||| ||||| |||||||| || || || ||||||||| | Sbjct 101 TAAAGAATACGTTTCGCTGTGAATGTTTTCCATCATAATCTGGAAACCATAGAAAAACTT 160 Query 11974 TGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACC 12033 || || | | | || || || ||| | || || || || |||||||| || || Sbjct 161 CGCTTCAGCATATTGAACTTCGTTTACAAAGTTCTCAGCCAAGTTTTCATTTACGATTCC 220 Query 12034 ATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAA 12093 ||| || |||||| ||||||| |||||||| || || ||| |||| || | | | | Sbjct 221 GTCAGAAGCTGCAAAGAATGCTAAAATATGTTTAATGAAATATCTTTCATCGTCATTCAG 280 Query 12094 TTT---ATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACT 12150 ||| || |||||| ||||||| ||||| | ||||||| | ||||| ||||| Sbjct 281 TTTGTTATTCCAATCTGTCAAATCTTGGTGCAAATCGATTTCTTCAGCAGTCCAGAAACT 340 Query 12151 TGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 || | || ||||||| || ||| |||||||||| || ||||| ||||||||||| Sbjct 341 AGCTTCCATTTTTTTATACCATTCCCAAATATCATGATGTTTGATAGGAAAAATAACGAA 400 >seq1301 Length=515170 Score = 140 bits (154), Expect = 3e-28 Identities = 984/1559 (63%), Gaps = 42/1559 (3%) Strand=Plus/Plus Query 36835 TAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTT 36894 |||||||| ||||| || | || | |||| |||||||||||||| |||| || Sbjct 331495 TAATACATACCAGTCTTCAAACCAAGCTTCCAACCGTAAAAATGCATTGAAGTCAACTTC 331554 Query 36895 GCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCT 36954 | | || || | | || | || ||| |||||||||||| || || ||||| Sbjct 331555 GAAAAGGTTGGTTCGGCAATGTGAATGTTCAAACTTTGACTTTGATCAATGAAAGCACCA 331614 Query 36955 CTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATT 37014 | || || |||| || | ||| ||||||||| || |||||||| || || || | Sbjct 331615 CGATCAGCAGCCAAGTCAATAATGACTTTTTGAGAAATTTCCCAAACTGTCTTGTACAAG 331674 Query 37015 TGTTTTA--TATT-----AT-CTGGTAAATCTAAATGTTGAATAGAACCATTATGTAACA 37066 | || | | || || |||| || ||| ||| | |||||| | | || Sbjct 331675 TCCTTCAATTCTTGCGGGATGCTGGGAA-TCTT----TTGTACTGAACCACCC-GCAGCA 331728 Query 37067 CAATTGT-ATTCTTTATGTCATTATTCCACATATTTCTACTTATT-AGTTCTCTCAATAG 37124 || |||||| ||| | |||||||| || | | | | | | || ||| | Sbjct 331729 ATGATGCGATTCTTCATGGATTCATTCCACA-ATCCCAATTCAGTCAAATCCTTCATCAA 331787 Query 37125 GTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGT 37184 || | |||| |||| || || || |||| ||| || | | || || || ||| ||| Sbjct 331788 GTATTGATTGACAATTTGGAATTCACCAGCTAAAACACGACGAGTGTAAATGTTGGAAGT 331847 Query 37185 ATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGG 37244 | || |||| | | ||||| | || | |||||||| ||||| ||||| ||||| || Sbjct 331848 GAAAGGCTCAAAGCATTCATTGTAACCAAGAATTTGAGAGGTAGAAGCAGTCGGCATGGG 331907 Query 37245 TGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCT--CTTTTTTAGTTCATTC 37302 || | || | | ||| | | |||||| | ||| | | || || | | | Sbjct 331908 AGCAAGTAACAAGGAATTACGAACACCATGTTCAGAAATCTTAGCCTTCAAAGCTGA--C 331965 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362 |||||||| || || | ||| || |||||| |||||||| | || ||| || ||| Sbjct 331966 CAATCCCACAAGTCGGAAGGGGTCACATTCCACATGTCATATTGCAAAACACCCTTGCTC 332025 Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGAT 37422 | || | | || || | ||| |||| | ||||| ||| | ||| ||| || | Sbjct 332026 ACAGGGCTACCCGGGTAAGTTTGATAGTGTCCTTCAATTTGAGCCAATTCACAAGAAGCT 332085 Query 37423 TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCG 37482 || | || |||| || || || || || ||||| |||| ||| || ||| Sbjct 332086 TCCAAGGCACCATAGTAGATGGTCTCAAAGATTTGCTTATTCAATTGACGAGCGCGTTCA 332145 Query 37483 CTATCGAATG-CATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACC 37541 | ||| |||| ||| | || | || || ||||||| || || ||||| || ||||| Sbjct 332146 CAATCAAATGGCATT-CGCATCAGAATGAAAGCATCAGCTAATCCTTGAACTCCAATACC 332204 Query 37542 TATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATC--ACTGGATAATAATTGATA 37599 ||||| | ||| | ||||||| | ||||| || | ||||| |||||||||| Sbjct 332205 AATGGGACGATGACGCATATTAGAAC--GACGAGCCTGTTCAACTGGGTAATAATTGACG 332262 Query 37600 TCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAAC 37659 || || || ||| | || || | | || | || | |||| | | ||| Sbjct 332263 TCAATGATACGATTCAAGTTCTTGGTGACAACCTTGGCAACATGTTTCAATTCTTTGAAA 332322 Query 37660 ATAAATACGTTATTAT---TAACAAATTTACTCAACGAAATAGATCCTAGATTACATACA 37716 ||| ||| |||| | ||||| | ||| | |||||| | | ||| || ||| Sbjct 332323 TCAAAAGTGTTCTTATCCTTGACAAAGGCAGGCAAAGCAATAGAAGCCAAATTGCAAACA 332382 Query 37717 GCAACTTCATCTTCGTTACTAA-ATTGTATAATCTCTGTACAGAGATTACTCGATCTAAT 37775 |||| ||||| | | | ||| | ||| || ||||| | ||| || | || Sbjct 332383 GCAATCTCATCAG-GAGCCGAGTATTCAACAATTTCAGTACACAAATTGGAACATTTGAT 332441 Query 37776 TGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGG 37835 |||||||| || ||||||| || ||| |||| ||| || || || || || || Sbjct 332442 GGTTCCCAAGTTTTGTTGATTGCTCTTGGAATTGCAAGCATCCTTGTACAGCATGTAAGG 332501 Query 37836 CGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT-GCTTTAACGA 37894 || || ||| | ||||| || | ||||| ||||| || ||| | || ||| | Sbjct 332502 AGTACCAGTTTCAACTTGAGATTCCAAAATAGCATTCCA-AAGCTTTTGAGCACGAACAA 332560 Query 37895 T-CG-CTTTAAtttttttCTTTGTTTCGTA-TTCTA-TATATAATTTGTTAAAATCATTC 37950 || | || ||| || |||||| |||| || | | || ||| ||| Sbjct 332561 CACGACGAGCATGACCTTCATT--TTCGTACTTCTCGTAAAGAGCTTC--AAATTCAGCA 332616 Query 37951 CCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCT 38010 ||||| ||||| | || || |||||||| ||| || | || ||||| ||||| || Sbjct 332617 CCCCAAACATCAGACAAACCAGGACATTCATTTGGGCAGAAGAGGGACCAGTCTTCGTCA 332676 Query 38011 TTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTT 38070 ||| || || | ||| || |||||| | ||| || ||| || || || | Sbjct 332677 GCTTCAACACGCTTCATGAACAAATCATTAATCCACAAAGCATAGAACAAGTCACGAGCA 332736 Query 38071 CTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGC 38130 | | |||||| ||||| ||||| | || | ||| || || | ||||||||| Sbjct 332737 CGAACTTCTTCCTTCCCAGTGTTCTTCTTCAAATCCAAAAAGTCAAAAACGTCAGCGTGC 332796 Query 38131 CATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATAT 38190 || ||||| | || | | | || || || | |||| ||| || |||| || || Sbjct 332797 CACGGTTCCAAGTAGACGGCAAAAGCACCCGGACGCTTATTACCACCTTGATCAACGTAA 332856 Query 38191 CTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATA 38250 | | | |||||||| || | | | ||| || || | |||||| |||| || || | Sbjct 332857 CGAGCCGTGTTATTGTAAACACGAAGCATGGGAACAAGACCATTGGATTGACCATTCGTG 332916 Query 38251 CCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCA 38310 || || || || | ||| ||| || || || || ||| || || ||||| ||| Sbjct 332917 CCAGAAATGTACGAACCAGCAGCACGAATGTTGTGAATGTTCAAACCAATACCACCAGCA 332976 Query 38311 TGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATC 38369 ||| || || ||||| || ||||| || ||| | ||||| || || |||||| Sbjct 332977 GATTTGGAAATCAAAGCACAAGTCTTTAAAGTTTCATAAATACCATCAATCGAGTCATC 333035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468512120547600