Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq1526 118 8e-22 seq368 87.8 1e-12 >seq1526 Length=132622 Score = 118 bits (130), Expect = 8e-22 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 || ||||| || || ||||| || | ||||| || |||||||| ||||| |||||| || Sbjct 118831 GCTTTTGCTGCCGTGGAAGGTATCTTCTTTTCCGGTTCATTTGCTGCCATTTTCTGGTTG 118772 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||| || | | ||||| || ||| | || ||||| || | || |||||||||||| Sbjct 118771 AAGAAGCGCGGGTTGATGCCCGGTTTGACCTTCTCCAATGAACTAATCAGCCGTGACGAA 118712 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCA 22907 ||||| || ||||| ||||| ||| || | || ||||| Sbjct 118711 GGTCTTCATTGTGATTTTGCCTGTTTGTTATTCAGGCA 118674 >seq368 Length=262043 Score = 87.8 bits (96), Expect = 1e-12 Identities = 120/164 (73%), Gaps = 3/164 (2%) Strand=Plus/Minus Query 22730 CTATCGCAACACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCAT 22789 ||||| || ||| || ||||||||||| || ||||||||| | | || ||||| |||| Sbjct 28448 CTATC-CAGAACGGCTTTTGGCCTTTGCTGCAGTTGAAGGCATTTTTTTCTCTGGCTCAT 28390 Query 22790 T-TGCGGCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAAC 22848 | ||| |||| || ||||| ||||| || | ||||| || | ||||| ||| Sbjct 28389 TCTGC-TCCATCTTTTGGCTCAAGAAGCGCGGTTTAATGCCTGGTCTAAGCTTTTCAAAC 28331 Query 22849 GAGTTGATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTG 22892 ||| | |||||||| ||||| ||| | ||| |||||||| || Sbjct 28330 GAGCTTATTAGCCGGGACGAGGGTATGCACACGGACTTTGCGTG 28287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356224200442495