Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1775 116 4e-21 seq1301 114 1e-20 seq1355 105 7e-18 >seq1775 Length=332822 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | |||||| || | ||| | ||| || ||||| ||||| || || || | Sbjct 274998 CCGCCACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCTGCC 274939 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||||||||| || |||||| |||||||||| ||||| ||||| || Sbjct 274938 AAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGA 274879 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||||| ||||| | | || | | || | ||||||||| Sbjct 274878 ATCCCTTCCTTGTCCTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACG 274819 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||| |||| || || ||||| || ||||| Sbjct 274818 TCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 274772 >seq1301 Length=515170 Score = 114 bits (126), Expect = 1e-20 Identities = 682/1079 (63%), Gaps = 38/1079 (4%) Strand=Plus/Plus Query 152745 GCCGGAAGCGTACGAAAATAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGTACATG 152804 |||||| | ||||| || || ||||| || ||||| | ||| | | ||| ||||| | Sbjct 331477 GCCGGACGAGTACGCAAGTAATACATACCAGTCTTCAAACCAAGCTTCCAACCGTAAAAA 331536 Query 152805 TGCACCGACGCCATCTTAGCCAAAGTAGGGTCGGCCATGTACACGTTAAACGATTGACTT 152864 |||| || | || ||| | || || || ||||| |||| | ||| || ||||||| Sbjct 331537 TGCATTGAAGTCAACTTCGAAAAGGTTGGTTCGGCAATGTGAATGTTCAAACTTTGACTT 331596 Query 152865 TGATCAATAAATGCGCCTCTATCTGCTGCCATGTCGATCATGAATTTTCCGTTGTTGTGC 152924 |||||||| || || || | ||| || |||| ||| || |||| |||| || Sbjct 331597 TGATCAATGAAAGCACCACGATCAGCAGCCAAGTCAATAATGACTTTT---------TGA 331647 Query 152925 CAGCATTCCCAGATTGTCATGTAC-AGCTTTTTAATGTTGTCGGGAATTT---CATCTAT 152980 | |||||| | |||| ||||| || || ||| | ||||| | |||| | Sbjct 331648 GAAATTTCCCAAACTGTCTTGTACAAGTCCTTCAATTCTTGCGGGATGCTGGGAATCTTT 331707 Query 152981 GGAAGCTATCGATCCTCGGTTTGCCATGATCCTTTTCCGCAT-ACTACTTGTGTACAGAT 153039 | || || || | || ||||| | ||| ||| | | | | ||| Sbjct 331708 TG----TACTGAACCACCCGCAGCAATGATGCGATTCTTCATGGATTCAT-TCCACAATC 331762 Query 153040 TCAATGCGATTAGATCATCGACCAAGTAGCGGTTGACAACTTGAAATTCGCCCGACAATA 153099 |||| | | | ||| | | |||||| | ||||||| ||| ||||| || | || | Sbjct 331763 CCAATTCAGTCAAATCCTTCATCAAGTATTGATTGACAATTTGGAATTCACCAGCTAAAA 331822 Query 153100 CACGTCTCAAAAACAAATT-ACTGTGAAACGGTTCAAACGACTCGTTGTTATTGAGTATT 153158 |||| | | | || |||||| || ||||| | || |||| | || ||| Sbjct 331823 CACGACGAGTGTAAATGTTGGAAGTGAAA-GGCTCAAAGCATTCATTGTAACCAAGAATT 331881 Query 153159 TGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGCAACGAATTACGTAATCCGTGTTTT 153218 || | ||| | || ||||||||| || | | ||| |||||||| | || |||| Sbjct 331882 TGAGAGGTAGAAGCAGTCGGCATGGGAGCAAGTAACAAGGAATTACGAACACCATGTTCA 331941 Query 153219 TGTATGTTCATCTTCAATTGTGACCAGTCCCATAACGAAGTAGGTATCGCATTCCACAAA 153278 || || |||||| |||||| ||||| || | ||| || ||||||||| Sbjct 331942 GAAATCTTAGCCTTCAAAGCTGACCAATCCCACAAGTCGGAAGGGGTCACATTCCACATG 332001 Query 153279 TCGTATTGCAATATCCCTTGGCTAGCTTTGCTACC--GGCAAACGTGCTA-TACGGCTCA 153335 || |||||||| | || | ||| | |||||| || || || || | ||| Sbjct 332002 TCATATTGCAAAACACCCTTGCTCACAGGGCTACCCGGGTAAGTTTGATAGTGTCCTTCA 332061 Query 153336 CTGTCAGACGCCAGTTTCAAACTGGCATCGAGCGCGGCATGATACACAGTTTCGGAAATC 153395 | | | |||| || || || || | || ||| || | || || | || Sbjct 332062 ATTTGA---GCCAATTCACAAGAAGCTTCCAAGGCACCATAGTAGATGGTCTCAAAGATT 332118 Query 153396 TGTTTGTTCAGTAAAACGGCAGCATCGCTCA----CGTACGGTATGCGCAACATGACAAA 153451 || || |||| | ||| ||| || ||| | | || || |||| || | || Sbjct 332119 TGCTTATTCAAT-TGACG--AGC-GCGTTCACAATCAAATGGCATTCGCATCAGAATGAA 332174 Query 153452 TGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttttt 153511 ||||| || || ||||||| ||||| || ||||||||||| ||||||||||| Sbjct 332175 AGCATCAGCTAATCCTTGAACTCCAATACCAATGGGACGATGACGCATATTAGAACGACG 332234 Query 153512 tGCAGCTTCAACAGGATAGAAATTGCGGTCGATAATTTTATTTAAACTAATCACGACATG 153571 || |||||| || || ||||| ||| || || ||| || | | |||| Sbjct 332235 AGCCTGTTCAACTGGGTAATAATTGACGTCAATGATACGATTCAAGTTCTTGGTGACAAC 332294 Query 153572 TTTCACCACAGAATGCAACAGTTGAAAATCAAA--CGTTC-CATTAATGATATATTTGTT 153628 || | ||| | ||| || |||||||| |||| || ||| | | Sbjct 332295 CTTGGCAACATGTTTCAATTCTTTGAAATCAAAAGTGTTCTTATCCTTGACAAAGGCAGG 332354 Query 153629 GACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTAT 153688 | ||||| || ||||| |||||||| ||| | || || || || | |||| || || Sbjct 332355 CAAAGCAATAGAAGCCAAATTGCAAACAGCAATCTCATCAGGAGCCGAGTATTCAACAAT 332414 Query 153689 TTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTT 153748 ||| | |||||||||| ||||| || || | || ||||||||| ||| || Sbjct 332415 TTCAGTACACAAATTGGAACATTTGATGGTTCCCAAGTTTTGTTGATTGCTCTTGGAATT 332474 Query 153749 ACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAATAG 153807 ||||| |||||||| |||||||| || || || ||||| ||||| ||| | ||||| Sbjct 332475 GCAAGCATCCTTGTACAGCATGTAAGGAGTACCAGTTTCAACTTGAGATTCCAAAATAG 332533 >seq1355 Length=184863 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||||| || | ||||| || ||||| || || ||||| || ||||| Sbjct 90655 GCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 90714 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||| || | ||| || |||||| | || ||||||||||| || || || Sbjct 90715 CAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGG 90774 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| || || || || | | || | | ||||| ||||| || Sbjct 90775 AATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAAC 90834 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| || ||||| || || ||||| || ||||| Sbjct 90835 GTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 90882 Score = 104 bits (114), Expect = 2e-17 Identities = 161/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTT-TGAATGTTATAATCGC 139595 ||| || || | |||||| || | ||||| || ||||| ||| || ||||| || |||| Sbjct 90883 GCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTCGC 90942 Query 139596 TCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 ||| || | ||| || | ||| || |||||| | || ||||||||||| || || | Sbjct 90943 TCAAAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTG 91002 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || ||||| ||||| || || || || | | || | | ||||| ||||| | Sbjct 91003 GAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAA 91062 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||| || | ||||| || ||||| || || ||||| || ||||| Sbjct 91063 CGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 91111 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || | ||||| || |||||||| || ||||| || ||||||| || | | Sbjct 90440 CGCAACACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCG 90499 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || | ||| || |||||| | || ||||||||||| || || || || ||||| ||| Sbjct 90500 TCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTG 90559 Query 139670 TCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || |||| || | || || || | | ||||| |||| || |||| || | Sbjct 90560 TCCTAAATTTCTTCTGCTTCACTTGTCGATCGAGTCGG-AAGCTCAACGTCAAGAGTAAT 90618 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || ||||| || || || || || ||||| Sbjct 90619 AGTCTTTCCCGTCAAAGTCTTGACAAAAATCTGCAT 90654 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||||| || | ||||| || ||||| || || ||||| || ||||| Sbjct 91112 GCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 91171 Query 139597 CATTGTGCTCGA-GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || || | ||| || | ||| || |||||| | || ||||||||||| || || | Sbjct 91172 CAAAGTTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTG 91231 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || ||||| ||||| || || || || | | || | | ||| | ||||| | Sbjct 91232 GAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGCTCTA 91291 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | ||||| || |||| ||| ||||| || || ||||| Sbjct 91292 CGTCGAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCAT 91340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496050575268000