Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1526 183 3e-41 seq368 134 1e-26 seq811 131 2e-25 >seq1526 Length=132622 Score = 183 bits (202), Expect = 3e-41 Identities = 628/962 (65%), Gaps = 24/962 (2%) Strand=Plus/Plus Query 13484 AAGTTGTTATTTATTCAACTTTATAATATTCAATAAAAACTAAAAATCAACATCTAATGA 13543 || ||||| || ||||| ||| | || || ||| | ||||| ||| |||| | | Sbjct 118306 AAATTGTTCTTAATTCATTTTTTTTATTTTT--TAAGTATTAAAAGTCAGCATCAAGAGT 118363 Query 13544 AAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTT 13603 |||| || || |||| || || || || ||||| || |||| ||| | || Sbjct 118364 GAAAATCTTTTC----TTGT--GACATGACACCAGCCTTTTGGTACTCACCAACCTTCTT 118417 Query 13604 TTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTAT 13663 ||||||||||||||| || |||| || || || ||||| ||||| || ||||| Sbjct 118418 TTCAAAGAAGTTAGTCTTTCCTTGCAAGGAAATCAAGTCCATGAAATCGAAAGGATTGTC 118477 Query 13664 TGACATAA-ACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAA 13722 | |||| | | ||| || || | | | || | |||||||| ||| |||| Sbjct 118478 T-ACATTGTAAAATTTGGGGCACTGCAGGGCAACCAACAAGCGATCAGCAACAAATTCAA 118536 Query 13723 TATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTA 13782 | || || |||| | | | |||||||| || || | || || | | || | Sbjct 118537 TGTACTGGCACATGAGAGCGCAATTCATGCCAATCAAAGCAACGGGCAAGGCCTCCGTCA 118596 Query 13783 AAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAG 13842 ||||| | ||| || ||||| || | || || || ||| | ||| ||||| Sbjct 118597 GGAATTCCTGTTCAATCTTGACAGCTTCCGTAATGATGTGAGTTATAGTGGCATCAGAAG 118656 Query 13843 GAGGATATTTTAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCAT 13899 || || | | || | || | ||||| ||||||||||||||||| || || | Sbjct 118657 GACGAGTGTGACGCAAGTGCCTGAATAACAAACAGGCAAAATCACAATGAAGACCTTCGT 118716 Query 13900 CTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACC 13959 | | || || ||||| || || || || || || |||||||| || || || || |||| Sbjct 118717 CACGGCTGATTAGTTCATTGGAGAAGGTCAAACCGGGCATCAACCCGCGCTTCTTCAACC 118776 Query 13960 AAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTA 14019 | || || ||||||||||| ||||||||||| || || || || |||||||| || | | Sbjct 118777 AGAAAATGGCAGCAAATGAACCGGAAAAGAAGATACCTTCCACGGCAGCAAAAGCAACAA 118836 Query 14020 ATCGTTCTCCAAACGATGCTTTTTTG-TTCGATATCCATTTTCTAGCCCATTCAGAtttt 14078 ||||||||||| | ||| |||| || ||||| ||||||| || || Sbjct 118837 GGCGTTCTCCAAAACA-GCTAGTTTGATTTTCAATCCAACGCATAGCCCAGTCTCCCTTC 118895 Query 14079 tttttAATAAAATCCATTGTTTCAATAGCATT--AAATAAATATTCCTTCTCTTTAGTAC 14136 || || | || || || ||||| ||||| ||| ||| | | || | || | Sbjct 118896 TTGCGAACACAAGGGATGGTGTCAATGGCATTGAAAAGGAATTTACGCTCAACTGGGT-C 118954 Query 14137 TTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTA 14196 | |||||| |||||||| || | |||||||||| ||| |||||||| || | Sbjct 118955 ACG-AATGTAGGTATCAATGAGGAGAGAGTACATTTCAGCGTGAATGTTTTCAATCATGA 119013 Query 14197 TCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC-CGAGTAAAATCTTTCG 14255 | || || || |||||||| | |||||| | ||| ||||| | | ||| | Sbjct 119014 TTTGGAACCCGTAAAAGCAACGAGCTTCTGGAACTTGAACTTCTTGTGCGAAA-CGAGTA 119072 Query 14256 GCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATA 14315 |||| |||||||| || ||||||||| || ||||| || ||||| | || | Sbjct 119073 ACCAAGTTTTCATTGACAATACCATCAGAGGCAGCAAAGAAAGCCAAAACACGAGAAACA 119132 Query 14316 AAGTATTGCTCTTCATT-GTTGAGTTTT--TTCCAATCGGATAAATCCTTAGAAAGATCT 14372 ||| || | || || || || | |||| | ||||| || ||||| ||||| || Sbjct 119133 AAGAATCGTTCATCGTTAGTCAACTTTTCGTCCCAATGTTTTATGTCCTTGGAAAGGTCA 119192 Query 14373 ACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTA 14432 ||||| || | ||||| || ||| |||| || || || | | ||| || || | | Sbjct 119193 ACTTCTTCGGCAGTCCAGAAGGAAGCTTCAGCCTTCTTGTAGAATTGCCAAATATCGTGA 119252 Query 14433 TA 14434 || Sbjct 119253 TA 119254 >seq368 Length=262043 Score = 134 bits (148), Expect = 1e-26 Identities = 368/552 (67%), Gaps = 14/552 (3%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 |||||||| || || | ||||| || | |||||||| ||||||||||| ||| Sbjct 28287 CACGCAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGA 28346 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAA 13990 || ||||| || || || || || | |||||| | || |||| ||||| || || || || Sbjct 28347 CCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGA-TGGAGCAGAATGAGCCAGAGAAAAA 28405 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA--TGCTTTTTTGTTC 14048 || || |||||||||||||| || | | |||||| | | || | | | || Sbjct 28406 AATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGGATC 28465 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 | ||| || |||||| | | |||||| | | || || || || |||||| Sbjct 28466 G--CACCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCA 28523 Query 14109 TTAAATAAATATTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA- 14165 | || || |||||||| | || ||| || || || ||||| | |||| | Sbjct 28524 CGTAGTAGATGGTCCTTCTCAATCGCGTCTTTG--ATATACGTGTCAATCA-AAAGCGAG 28580 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 |||| ||| |||||||| || || || || || ||||| || |||||||| | ||| || Sbjct 28581 TACACTTCCGAGTGTATATTCTCGATTGCGATTTGAAACCCGTAAAAGCAGCGAGCCTCT 28640 Query 14226 GACCATTGTACTTCCGAG-TAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14284 | | || ||||| | |||||| | ||| | ||||||||| || || || ||||| Sbjct 28641 GGCACCTGCACTTCGTTGCTAAAAT-TCATGGCTAGATTTTCATTCACGATGCCGTCACT 28699 Query 14285 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT 14344 ||| ||||| || || | | | ||||| || || |||| | | |||| | Sbjct 28700 AGCAGCAAAGAAAGCGAGCACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGGCTAGC 28759 Query 14345 CCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14404 |||||| | ||| | ||||| | ||| ||| ||||||| ||| ||| |||| Sbjct 28760 CCAATCTTTCAGATCGTGCACCAGATCGAGTTCCTCAGCTGTCCAGAAAGAAGCTTCAGC 28819 Query 14405 TTTTTTATACAT 14416 ||| || ||||| Sbjct 28820 TTTCTTGTACAT 28831 >seq811 Length=1194 Score = 131 bits (144), Expect = 2e-25 Identities = 218/312 (70%), Gaps = 5/312 (2%) Strand=Plus/Plus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 || ||| |||||||| | ||| |||| |||| ||| ||||||||||| ||||| Sbjct 83 AACGTAAGTATCAATTAATAAAGAATACGTTTCGCTGTGAATGTTTTCCATCATAATCTG 142 Query 14201 AAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTA-AAATCTTTCGGCCA 14259 |||||||| || | | ||||| | |||| |||| || || ||| | || |||| Sbjct 143 GAAACCATAGAAAAACTTCGCTTCAGCATATTGAACTT-CGTTTACAAAGTTCTCAGCCA 201 Query 14260 AATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14319 | |||||||| || || || ||| ||||||||| ||||| || || | |||||| || | Sbjct 202 AGTTTTCATTTACGATTCCGTCAGAAGCTGCAAAGAATGCTAAAATATGTTTAATGAAAT 261 Query 14320 ATTGCTCTTCATTGTTGAGT---TTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTT 14376 || || || | || ||| || |||||||| | ||||| | | ||| | || Sbjct 262 ATCTTTCATCGTCATTCAGTTTGTTATTCCAATCTGTCAAATCTTGGTGCAAATCGATTT 321 Query 14377 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14436 | ||| | ||||| |||||||| | |||||||||| | |||| || || | || | Sbjct 322 CTTCAGCAGTCCAGAAACTAGCTTCCATTTTTTTATACCATTCCCAAATATCATGATGTT 381 Query 14437 ATATAGGAAAAA 14448 |||||||||| Sbjct 382 TGATAGGAAAAA 393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479715017361000