Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1526 206 3e-48 seq811 131 2e-25 seq368 129 6e-25 >seq1526 Length=132622 Score = 206 bits (228), Expect = 3e-48 Identities = 633/962 (66%), Gaps = 24/962 (2%) Strand=Plus/Plus Query 13272 AAGTTGTTATTTATTCAACTTTATAATATTTAATAAAAACTAAAAATCAACATCTAATGA 13331 || ||||| || ||||| ||| | || ||| ||| | ||||| ||| |||| | | Sbjct 118306 AAATTGTTCTTAATTCATTTTTTTTATTTTT--TAAGTATTAAAAGTCAGCATCAAGAGT 118363 Query 13332 AAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTT 13391 |||| || || |||| || || || || ||||| || |||| ||| | || Sbjct 118364 GAAAATCTTTTC----TTGT--GACATGACACCAGCCTTTTGGTACTCACCAACCTTCTT 118417 Query 13392 TTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGT 13451 |||||| |||||||| || |||| || || || ||||| |||||||| ||||| || Sbjct 118418 TTCAAAGAAGTTAGTCTTTCCTTGCAAGGAAATCAAGTCCATGAAATCGAAAGGATT-GT 118476 Query 13452 TGACATAA-ACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAA 13510 |||| | | ||| || || | | || || | |||||||| ||| |||| Sbjct 118477 CTACATTGTAAAATTTGGGGCACTGCAGGGCAACCAACAAGCGATCAGCAACAAATTCAA 118536 Query 13511 TATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTA 13570 | || || |||| | | | |||||||| || || | || || | | || | Sbjct 118537 TGTACTGGCACATGAGAGCGCAATTCATGCCAATCAAAGCAACGGGCAAGGCCTCCGTCA 118596 Query 13571 AAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAG 13630 ||||| | ||| || ||||| || | || || | ||| || ||| ||||| Sbjct 118597 GGAATTCCTGTTCAATCTTGACAGCTTCCGTAATGATGTGAGTTATAGTGGCATCAGAAG 118656 Query 13631 GAGGATATTTTAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCAT 13687 || || | | || | || | ||||| ||||||||||||||||| || || | Sbjct 118657 GACGAGTGTGACGCAAGTGCCTGAATAACAAACAGGCAAAATCACAATGAAGACCTTCGT 118716 Query 13688 CTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACC 13747 | | || || ||||| || || || || || || |||||||| || || || || |||| Sbjct 118717 CACGGCTGATTAGTTCATTGGAGAAGGTCAAACCGGGCATCAACCCGCGCTTCTTCAACC 118776 Query 13748 AAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTA 13807 | || || ||||| ||||| ||||||||||| || || || || |||||||| || | | Sbjct 118777 AGAAAATGGCAGCAAATGAACCGGAAAAGAAGATACCTTCCACGGCAGCAAAAGCAACAA 118836 Query 13808 GTCGTTCTCCAAACGATGCTTTTTTG-TTTGATATCCATTTTCTAGCCCATTCAGAtttt 13866 | ||||||||||| | ||| |||| ||| ||||| ||||||| || || Sbjct 118837 GGCGTTCTCCAAAACA-GCTAGTTTGATTTTCAATCCAACGCATAGCCCAGTCTCCCTTC 118895 Query 13867 tttttAATAAAATCCATTGTTTCGATTGCATTGAATA--AATGTTCCTTCTCTTTAGTAC 13924 || || | || || || || || |||||||| | ||| | | || | || | Sbjct 118896 TTGCGAACACAAGGGATGGTGTCAATGGCATTGAAAAGGAATTTACGCTCAACTGGGT-C 118954 Query 13925 TTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTA 13984 | |||||| |||||||| || | |||||||||| ||| |||||||| || | Sbjct 118955 ACG-AATGTAGGTATCAATGAGGAGAGAGTACATTTCAGCGTGAATGTTTTCAATCATGA 119013 Query 13985 TCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCT 14043 | || || || ||||| || | |||||||| ||| || || | | ||| | Sbjct 119014 TTTGGAACCCGTAAAAGCAACGAGCTTCTGGAACTTGAACTTCTTGTGCGAAA-CGAGTA 119072 Query 14044 GCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATA 14103 ||||||||||||| |||||||||||| || ||||| || ||||| | || | Sbjct 119073 ACCAAGTTTTCATTGACAATACCATCAGAGGCAGCAAAGAAAGCCAAAACACGAGAAACA 119132 Query 14104 AAGTATTGCTCTTCATT-GTTGAGTTTT--TTCCAATCGGCTAAATCCTTAGAAAGATCT 14160 ||| || | || || || || | |||| | ||||| || ||||| ||||| || Sbjct 119133 AAGAATCGTTCATCGTTAGTCAACTTTTCGTCCCAATGTTTTATGTCCTTGGAAAGGTCA 119192 Query 14161 ACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTA 14220 ||||| || | ||||| || ||| |||| || || || | | ||| || || | | Sbjct 119193 ACTTCTTCGGCAGTCCAGAAGGAAGCTTCAGCCTTCTTGTAGAATTGCCAAATATCGTGA 119252 Query 14221 TA 14222 || Sbjct 119253 TA 119254 >seq811 Length=1194 Score = 131 bits (144), Expect = 2e-25 Identities = 218/312 (70%), Gaps = 5/312 (2%) Strand=Plus/Plus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 || ||| |||||||| | ||| |||| |||| ||| |||||||| || ||||| Sbjct 83 AACGTAAGTATCAATTAATAAAGAATACGTTTCGCTGTGAATGTTTTCCATCATAATCTG 142 Query 13989 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTT-TCTGCCA 14047 |||||||| ||| | | ||||| | |||| || || | || || || || |||| Sbjct 143 GAAACCATAGAAAAACTTCGCTTCAGCATATTGAACTTC-GTTTACAAAGTTCTCAGCCA 201 Query 14048 AGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14107 |||||||||| || || || ||| ||||||||| ||||| || || | |||||| || | Sbjct 202 AGTTTTCATTTACGATTCCGTCAGAAGCTGCAAAGAATGCTAAAATATGTTTAATGAAAT 261 Query 14108 ATTGCTCTTCATTGTTGAGT---TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTT 14164 || || || | || ||| || |||||||| | ||||| | | ||| | || Sbjct 262 ATCTTTCATCGTCATTCAGTTTGTTATTCCAATCTGTCAAATCTTGGTGCAAATCGATTT 321 Query 14165 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14224 | ||| | ||||| |||||||| | |||||||||| | |||| || || | || | Sbjct 322 CTTCAGCAGTCCAGAAACTAGCTTCCATTTTTTTATACCATTCCCAAATATCATGATGTT 381 Query 14225 ATATAGGAAAAA 14236 |||||||||| Sbjct 382 TGATAGGAAAAA 393 >seq368 Length=262043 Score = 129 bits (142), Expect = 6e-25 Identities = 368/552 (67%), Gaps = 14/552 (3%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 |||||||| || || | ||||| || | |||||||| ||||||||||| ||| Sbjct 28287 CACGCAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGA 28346 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAA 13778 || ||||| || || || || || | |||||| | || ||| |||||| || || || || Sbjct 28347 CCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGA-TGGAGCAGAATGAGCCAGAGAAAAA 28405 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATG-CTTTTTTGTTTG 13837 || || |||||||||||||| || | || |||||| | | || | || | Sbjct 28406 AATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGGATC 28465 Query 13838 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCAT 13897 | ||| || |||||| | | |||||| | | || || || ||||| ||| Sbjct 28466 GCA-CCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCAC 28524 Query 13898 TGAATAAATGTTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-T 13954 | || ||| |||||||| | || ||| || || || ||||| | |||| | | Sbjct 28525 GTAGTAGATGGTCCTTCTCAATCGCGTCTTTG--ATATACGTGTCAATCA-AAAGCGAGT 28581 Query 13955 ACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 ||| ||| |||||||| || || || || || ||||| || ||||| || | ||| |||| Sbjct 28582 ACACTTCCGAGTGTATATTCTCGATTGCGATTTGAAACCCGTAAAAGCAGCGAGCCTCTG 28641 Query 14015 ACCATTGTACCTCCGAG-TAAAATCTTTCTGCCAAG-TTTTCATTAACAATACCATCACT 14072 | || || || | ||||| || || | || |||||||| || || || ||||| Sbjct 28642 GCACCTGCACTTCGTTGCTAAAA--TTCATGGCTAGATTTTCATTCACGATGCCGTCACT 28699 Query 14073 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT 14132 ||| ||||| || || | | | ||||| || || |||| | | |||| | Sbjct 28700 AGCAGCAAAGAAAGCGAGCACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGGCTAGC 28759 Query 14133 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14192 |||||| | ||| | ||||| | ||| ||| ||||||| ||| ||| |||| Sbjct 28760 CCAATCTTTCAGATCGTGCACCAGATCGAGTTCCTCAGCTGTCCAGAAAGAAGCTTCAGC 28819 Query 14193 TTTTTTATACAT 14204 ||| || ||||| Sbjct 28820 TTTCTTGTACAT 28831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478575848190600