Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1301 387 2e-102 seq1526 235 7e-57 seq811 134 2e-26 seq312 84.2 3e-11 >seq1301 Length=515170 Score = 387 bits (428), Expect = 2e-102 Identities = 1202/1839 (65%), Gaps = 44/1839 (2%) Strand=Plus/Plus Query 70831 GTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 70890 ||||| | || ||||| || || || | ||| || |||| |||||||||||||| Sbjct 331486 GTACGCAAGTAATACATACCAGTCTTCAAACCAAGCTTCCAACCGTAAAAATGCATTGAA 331545 Query 70891 GTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATG 70950 || | || ||| || | || ||||| |||||||| |||| ||||||||||| ||| Sbjct 331546 GTCAACTTCGAAAAGGTTGGTTCGGCAATGTGAATGTTCAAACTTTGACTTTGATCAATG 331605 Query 70951 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 71010 || || || | || ||||||| | || || ||||| | ||||||||||| || Sbjct 331606 AAAGCACCACGATCAGCAGCCAAGTCAATAATGACTTTTTGAGAAATTTCCCAAACTGTC 331665 Query 71011 TTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTATTCT---GAATGGATCCACCATC 71066 || || || || | ||| |||| || | | | | | ||| | | || ||||| | Sbjct 331666 TTGTACAAGTCCTTCAAT-TCTTGCGGGATGCTGGGAATCTTTTGTACTGAACCACCCGC 331724 Query 71067 TGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAG 71126 ||||| || | ||| || || ||||||||| ||| || || ||| | | | Sbjct 331725 AGCAATGATGCGATTCTTCATGGATTCATTCCACAATCCCAATTCAGTCAAATCCTTCAT 331784 Query 71127 GAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACT 71186 | | |||| || | ||| ||||| |||| || || | |||||||||||| || Sbjct 331785 CAAGTATTGATTGACAATTTGGAATTCACCAGCTAAAACACGACGAGTGTAAATGTTGGA 331844 Query 71187 GGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCAT 71246 || | || || | | ||||| | || | |||||||| || || ||||||||||| Sbjct 331845 AGTGAAAGGCTCAAAGCATTCATTGTAACCAAGAATTTGAGAGGTAGAAGCAGTCGGCAT 331904 Query 71247 AGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGA--TTTTATCTTTTAGAGAT 71304 || || | || | ||| | || ||||||| || || | ||| | || | || | Sbjct 331905 GGGAGCAAGTAACAAGGAATTACGAACACCATGT--TCAGAAATCTTAGCCTTCAAAGCT 331962 Query 71305 TCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTA 71364 ||||| ||| | || || || || | || || Sbjct 331963 GACCAATCCCACAAGTCGGAAGGGGTCACATTCCACATGTCATATTGCAAAACACCCTTG 332022 Query 71365 CT---AGCG-TATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACA 71420 || || | || || | || || | || ||||||| ||| || | |||||| Sbjct 332023 CTCACAGGGCTA----CCCGGGTAAGTTTGATAGTGTCCTTCAATTTGAGCCAATTCACA 332078 Query 71421 ACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGAT--CTTGT 71478 | || || || || ||||| || ||||| || || || | |||||| | | | | Sbjct 332079 AGAAGCTTCCAAGGCACCATAGTAGATGGTCTCAAAGATTTGCTTATTCAATTGACGAGC 332138 Query 71479 GCTTCCGGGCTATCAAATGGATAATTT--AAGAGAATAAACGCGTCTGCTAATCCTTGAA 71536 || | | | ||||||||| ||| | ||||| || || || ||||||||||||| Sbjct 332139 GCGTTCA--CAATCAAATGGC--ATTCGCATCAGAATGAAAGCATCAGCTAATCCTTGAA 332194 Query 71537 CGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAAT 71596 | |||||||| || || | || | | |||||||| ||| | | || || |||| Sbjct 332195 CTCCAATACCAATGGGACGATGACGCATATTAGAACGACGAGCCTGTTCAACTGGGTAAT 332254 Query 71597 AATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTT 71656 |||| | || || || ||| | || || | || ||| | |||| || | || Sbjct 332255 AATTGACGTCAATGATACGATTCAAGTTCTTGGTGACAACCTTGGCAACATGTTTCAATT 332314 Query 71657 TGAGAAAATCAAATCT---CCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGAT 71713 |||||||| | | ||| | ||||| | ||| |||| ||| |||| || Sbjct 332315 CTTTGAAATCAAAAGTGTTCTTATCCTTGACAAAGGCAGGCAAAGCAATAGAAGCCAAAT 332374 Query 71714 TACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTAC 71773 | ||||| || | ||||| || | | | |||| | ||||||||| || | ||| || Sbjct 332375 TGCAAACAGCAATCTCATCAGGAGCCGAGTATTCAACAATTTCAGTACACAAATTGGAAC 332434 Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 71833 | ||||||||||| || ||||||||||| ||||| || || |||||||| || || | Sbjct 332435 ATTTGATGGTTCCCAAGTTTTGTTGATTGCTCTTGGAATTGCAAGCATCCTTGTACAGCA 332494 Query 71834 TAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 71893 | | |||||||||||||||| |||||||| | ||| || ||||| | | |||| Sbjct 332495 TGTAAGGAGTACCAGTTTCAACTTGAGATTCCAAAATAGCATTCCAAAGCTTTTGAGCAC 332554 Query 71894 TTATTATATT-CTTGTATCTCTTTTCTCTTTCGTA-TTGT-GTATATAATCGTTCGAACT 71950 | | | | | || | || | ||||||| || | ||| | | ||| || | Sbjct 332555 GAACAACACGACGAGCATGACCTTCAT-TTTCGTACTTCTCGTAAAGAGC--TTCAAATT 332611 Query 71951 CGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTC 72010 | | |||||| ||| || |||||||||||||| || || | | ||||| ||| Sbjct 332612 CAGCACCCCAAACATCAGACAAACCAGGACATTCATTTGGGCAGAAGAGGGACCAGTCTT 332671 Query 72011 CATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCT 72069 | ||| | | || || ||||| || | |||| |||||| | ||| ||| || | || Sbjct 332672 CGTCAGCTTCAACACGCTTCATGAACAAATCATTAATCCACAAAGC-ATAGAACAAGTCA 332730 Query 72070 CTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCA 72129 | | | | || || || || || ||||| || | ||| | || | | || ||| Sbjct 332731 CGAGCACGAACTTCTTCCTTCCCAGTGTTCTTCTTCAAATCCAAAAAGTCAAAAACGTCA 332790 Query 72130 GAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCT 72189 | ||||||||||||||||| | ||| | | | ||||| || || || || || ||||| Sbjct 332791 GCGTGCCACGGTTCCAAGTAGACGGCAAAAGCACCCGGACGCTTATTACCACCTTGATCA 332850 Query 72190 ATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCA 72249 | ||| | ||| |||||||| ||||| | | ||| |||| || |||||||||| |||| Sbjct 332851 ACGTAACGAGCCGTGTTATTGTAAACACGAAGCATGGGAACAAGACCATTGGATTGACCA 332910 Query 72250 TTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCC 72309 || || || || || || ||| |||||||| ||| ||| | ||| || || Sbjct 332911 TTCGTGCCAGAAATGTACGAACCAGCAGCACGAATGTTGTGAATGTTCAAACCAATACCA 332970 Query 72310 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTA 72369 || || ||| || || || || || ||||| || ||||| || || || || Sbjct 332971 CCAGCAGATTTGGAAATCAAAGCACAAGTCTTTAAAGTTTCATAAATACCATCAATCGAG 333030 Query 72370 TCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATT 72428 ||||| ||| || || || || || ||||| ||| || || |||| || |||| Sbjct 333031 TCATCAGACATCGTCAACAAG-AAGCAAGAAGACAGTTGAGGATGATTAGTACCGGCATG 333089 Query 72429 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 72488 || | ||| || ||| |||| ||||| | |||||| || | |||||||| ||||| Sbjct 333090 GAAGAGGGTGGGTGAACCGTGAGTAAAATACTTTTCACTCATGAAATTGTACGATTCAAT 333149 Query 72489 AGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGG 72548 ||| || || || || || ||||||| |||||||| | ||| || ||||| Sbjct 333150 AGCCGAGTCAATGTCAGTACCGTGCATTCCTATGCAAACACGCATGAGCATGTGTTGAGG 333209 Query 72549 TCTTTCAACGATCTTGTT-ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAAC 72607 | |||||||| | ||| ||| ||||||| |||||| | ||| | ||| || |||| Sbjct 333210 ACGTTCAACGA-CGCGTTCATTAATTTTCATCAAGTATGCACGTTCAAGAGTCTTGAAAC 333268 Query 72608 CAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAAT 72644 |||| || ||||| || || || || ||||| || || Sbjct 333269 CAAAGTAATTGTAATTGTAA--TCACGATCGTAGATGAT 333305 >seq1526 Length=132622 Score = 235 bits (260), Expect = 7e-57 Identities = 617/932 (66%), Gaps = 21/932 (2%) Strand=Plus/Plus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAGACATAACTCCCATTTTTTG 41778 |||||||||| |||| | || ||| || |||||| ||||| || || ||||| Sbjct 118343 TTAAAAGTCAGCATCAAGAGTGAAAATCTT---TTCTTGTGACATGACACCAGCCTTTTG 118399 Query 41779 GTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCAT 41838 ||| ||||| || ||||| || || ||||||||||||| ||| || || ||||| Sbjct 118400 GTACTCACCAACCTTCTTTTCAAAGAAGTTAGTCTTTCCTTGCAAGGAAATCAAGTCCAT 118459 Query 41839 GAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCT 41898 |||||| || |||||| ||||| |||| ||| | || || | ||| | Sbjct 118460 GAAATCGAAAGGATTGTCTACATTGTAAAATTTGGGGCACTGCAGGGCAACCAACAAGCG 118519 Query 41899 ATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 41958 ||| || | ||||| || || ||| | | |||||||| || || | ||| Sbjct 118520 ATCAGCAACAAATTCAATGTACTGGCACATGAGAGCGCAATTCATGCCAATCAAAGCAAC 118579 Query 41959 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCT 42018 || | ||| | || || ||||| |||||||| ||| || || || || || | Sbjct 118580 GGGCAAGGCCTCCGTCAGGAATTCCTGTTCAATCTTGACAGCTTCCGTAATGATGTGAGT 118639 Query 42019 TACTGTTTCTTCACTCGGTGGA---TACAATAAATGTTTAAACATCAAACATGCGAAATC 42075 || || | ||| || || | || || | || | |||||| || ||||| Sbjct 118640 TATAGTGGCATCAGAAGGACGAGTGTGACGCAAGTGCCTGAATAACAAACAGGCAAAATC 118699 Query 42076 GCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAG 42135 || || ||||| || || | || |||| ||| ||||| || || | |||||||| | Sbjct 118700 ACAATGAAGACCTTCGTCACGGCTGATTAGTTCATTGGAGAAGGTCAAACCGGGCATCAA 118759 Query 42136 GCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTAC 42195 || ||||| || | ||| || || | |||||||| || ||||||||||| ||||| || Sbjct 118760 CCCGCGCTTCTTCAACCAGAAAATGGCAGCAAATGAACCGGAAAAGAAGATACCTTCCAC 118819 Query 42196 TGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT---ATCCACTTTTG 42252 || ||||| |||| ||| | |||||| ||| | | | | || | ||||| Sbjct 118820 GGCAGCAAAAGCAACAAGGCGTTCTCCAAAACAGCTAGTTTGATTTTCAATCCAACGCAT 118879 Query 42253 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 42312 |||||| || ||||||| |||||||| || || || |||||||| || || | || Sbjct 118880 AGCCCAGTCTCCCTTCTTGCGAACACAAGGGATGGTGTCAATGGCATTGAAAAGGAATTT 118939 Query 42313 tttttCATTACT--ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGA 42370 ||| ||| || || || ||||| || | ||| |||||||| | ||| Sbjct 118940 ACGCTCA--ACTGGGTCACGAATGTAGGTATCAATGAGGAGAGAGTACATTTCAGCGTGA 118997 Query 42371 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC- 42429 ||||||||||| || || || ||||| || || | || || | ||| || ||||| Sbjct 118998 ATGTTTTCAATCATGATTTGGAACCCGTAAAAGCAACGAGCTTCTGGAACTTGAACTTCT 119057 Query 42430 TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489 ||| | ||| || | | || ||||| || || || || ||| ||| ||||| || || Sbjct 119058 TGTGCGAAA-CGAGTAACCAAGTTTTCATTGACAATACCATCAGAGGCAGCAAAGAAAGC 119116 Query 42490 CAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA---TTTATTCCAATCATTGAT 42546 ||| ||| | | ||| || ||| || || || || | ||||| || || Sbjct 119117 CAAAACACGAGAAACAAAGAATCGTTCATCGTTAGTCAACTTTTCGTCCCAATGTTTTAT 119176 Query 42547 ATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACAT 42606 || || || | || |||||||| | ||||| || || ||||| ||||| || || | Sbjct 119177 GTCCTTGGAAAGGTCAACTTCTTCGGCAGTCCAGAAGGAAGCTTCAGCCTTCTTGTAGAA 119236 Query 42607 ATTCCAGATATCATGATA-TTGAATTGGGAAA 42637 | ||| ||||| ||||| |||| ||||||| Sbjct 119237 TTGCCAAATATCGTGATACTTGA--TGGGAAA 119266 >seq811 Length=1194 Score = 134 bits (148), Expect = 2e-26 Identities = 256/374 (68%), Gaps = 5/374 (1%) Strand=Plus/Plus Query 42289 TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAA 42348 ||||| |||||||| | | |||| ||| ||||||||| || ||||| || || Sbjct 41 TTCTAAAGCATTAAACAATTCTGTTTTCTCAGCTTCATCTTTAACGTAAGTATCAATTAA 100 Query 42349 AAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 42408 | | |||| |||| ||||||||||| || ||||| || || |||||| | | Sbjct 101 TAAAGAATACGTTTCGCTGTGAATGTTTTCCATCATAATCTGGAAACCATAGAAAAACTT 160 Query 42409 GGCCTCGGTAACCTGTACTTC-TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTC 42467 || || | | || ||||| | |||||| | ||||| || ||||| || || |||| Sbjct 161 CGCTTCAGCATATTGAACTTCGTTTACAAAGT-TCTCAGCCAAGTTTTCATTTACGATTC 219 Query 42468 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA 42527 ||||| |||||||| || || || | |||||| || |||||| |||| || | | Sbjct 220 CGTCAGAAGCTGCAAAGAATGCTAAAATATGTTTAATGAAATATCTTTCATCGTCATTCA 279 Query 42528 AT---TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATG 42584 | ||||||||||| | | ||||| | ||| | |||||| | ||||| || Sbjct 280 GTTTGTTATTCCAATCTGTCAAATCTTGGTGCAAATCGATTTCTTCAGCAGTCCAGAAAC 339 Query 42585 ATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAA 42644 ||||| ||||||||| | ||| |||||||||| || || || |||||||| | Sbjct 340 TAGCTTCCATTTTTTTATACCATTCCCAAATATCATGATGTTTGATAGGAAAAATAACGA 399 Query 42645 ATCTATTTGGATTT 42658 | | |||| |||| Sbjct 400 AACGATTTTTATTT 413 >seq312 Length=309945 Score = 84.2 bits (92), Expect = 3e-11 Identities = 182/271 (67%), Gaps = 1/271 (0%) Strand=Plus/Minus Query 71440 TAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGA 71499 ||||| || ||||| || || || ||| | || |||| |||| ||||||| | Sbjct 18811 TAATAGATCGTTTCAAAGATTTTTCGATTCAAGTCGCGTGCGGATTGGCTCTCAAATGCA 18752 Query 71500 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGT 71559 |||| | ||||||||| || || || |||||| | |||||||| |||| || | ||| Sbjct 18751 AAATTCATGAGAATAAAAGCATCAGCCAATCCT-GCACGCCAATGCCGACCGGGCGGTGG 18693 Query 71560 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 71619 | | |||| || ||| |||||||| | ||||| || || | || || | || || Sbjct 18692 CGCATATTGGACGTTTGGGCTTCTGGCACTGGATAGTAGTTGACGTCAATGACCTTGTTT 18633 Query 71620 AGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCT 71679 | || | | ||||||||||| || | ||||| | | ||||| ||| ||| Sbjct 18632 AAGTTGCGCGTCACCACTTTGACCACGTCGTAGAGTTTCCGGTAGTCAAAGACCCCGTCT 18573 Query 71680 ATTACAAACACGTTCAAGGCAACAGATGCCA 71710 |||||| | |||||| || || |||| Sbjct 18572 TGCACAAACTTGGGCAAGGCCACCGACGCCA 18542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671121037295400