Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1301 122 9e-23 seq1355 105 7e-18 >seq1301 Length=515170 Score = 122 bits (134), Expect = 9e-23 Identities = 247/366 (67%), Gaps = 3/366 (1%) Strand=Plus/Plus Query 156854 GGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGA 156913 || || |||| || || || ||||| || || ||||||| ||||| || ||||||||| Sbjct 332155 GGCATTCGCATCAGAATGAAAGCATCAGCTAATCCTTGAACTCCAATACCAATGGGACGA 332214 Query 156914 TGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTA 156973 || ||||||||||| || ||||| ||||| ||||| ||||| || | Sbjct 332215 TGACGCATATTAGAACGACGAGCCTGTTCAACTGGGTAATAATTGACGTCAATGATACGA 332274 Query 156974 TTCAAACTATCCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGTATCA 157033 ||||| | | ||| ||| | ||| | |||| || ||||||||||| | Sbjct 332275 TTCAAGTTCTTGGTGACAACCTTGGCAACATGTTTCAATTCTTTGAAATCAAAAGTGTTC 332334 Query 157034 TTA---TTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCG 157090 ||| |||| | | | | ||||| || || | ||| || || ||| | || || Sbjct 332335 TTATCCTTGACAAAGGCAGGCAAAGCAATAGAAGCCAAATTGCAAACAGCAATCTCATCA 332394 Query 157091 GGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTA 157150 || || | |||| || ||||| | |||||||||| ||||| || ||| | || Sbjct 332395 GGAGCCGAGTATTCAACAATTTCAGTACACAAATTGGAACATTTGATGGTTCCCAAGTTT 332454 Query 157151 CTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCG 157210 ||||||||| ||| |||||||| |||||||| | |||||| || || || ||||| Sbjct 332455 TGTTGATTGCTCTTGGAATTGCAAGCATCCTTGTACAGCATGTAAGGAGTACCAGTTTCA 332514 Query 157211 GCTTGA 157216 ||||| Sbjct 332515 ACTTGA 332520 >seq1355 Length=184863 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | |||||| || | |||| || || || || || |||||||| ||||| Sbjct 90655 GCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 90714 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | ||| || | || || |||||| | || ||||||||||| || || || Sbjct 90715 CAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGG 90774 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| || || || | | || | || ||| | || || || Sbjct 90775 AATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAAC 90834 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || ||||| || || ||||| || ||||| Sbjct 90835 GTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 90882 Score = 104 bits (114), Expect = 2e-17 Identities = 161/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTT-TGTATGTTGTAATCGC 143015 |||||| || | |||||| || | |||| || || || ||| || |||||||| |||| Sbjct 90883 GCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTCGC 90942 Query 143016 TCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 ||| || | ||| || | || || |||||| | || ||||||||||| || || | Sbjct 90943 TCAAAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTG 91002 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||| ||||| ||| || || || | | || | || ||| | || || | Sbjct 91003 GAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAA 91062 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | |||| ||| | ||||| || ||||| || || ||||| || ||||| Sbjct 91063 CGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 91111 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | |||||| || | |||| || || || || || |||||||| ||||| Sbjct 91112 GCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 91171 Query 143017 CATTGTGCTCGA-GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || || | ||| || | || || |||||| | || ||||||||||| || || | Sbjct 91172 CAAAGTTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTG 91231 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||| ||||| ||| || || || | | || | || ||| | || |||| Sbjct 91232 GAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGCTCTA 91291 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | ||| | ||||| || |||| || ||||| || || ||||| Sbjct 91292 CGTCGAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCAT 91340 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 ||||| || | |||| || || ||||| || |||||||| ||||||| || | | Sbjct 90440 CGCAACACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCG 90499 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || || | || || |||||| | || ||||||||||| || || || || ||||| ||| Sbjct 90500 TCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTG 90559 Query 143090 TCGGTAATTTTTTGT-TTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 || ||||| || | || || || | || || || | || || |||| ||| | Sbjct 90560 TCCTAAATTTCTTCTGCTTCACTTGTCGATCGAGT-CGGAAGCTCAACGTCAAGAGTAAT 90618 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || ||||| || || || || || ||||| Sbjct 90619 AGTCTTTCCCGTCAAAGTCTTGACAAAAATCTGCAT 90654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507000678922800