Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1526 268 1e-66 seq1301 179 5e-40 seq368 134 2e-26 seq1342 102 1e-16 >seq1526 Length=132622 Score = 268 bits (296), Expect = 1e-66 Identities = 608/901 (67%), Gaps = 24/901 (3%) Strand=Plus/Minus Query 124994 CCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||| |||||||||| |||||| || |||||| || | ||||| |||||| | || ||||| Sbjct 119270 CCTCTTTCCCATCAAGTATCACGATATTTGGCAATTCTACAAGAAGGCTGAAGCTTCCTT 119211 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTGA 125112 ||||| | |||||| || || || ||||||||| | | ||||||| || ||| || Sbjct 119210 CTGGACTGCCGAAGAAGTTGACCTTTCCAAGGACATAAAACATTGGGACGAAAAGTT-GA 119152 Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 || | ||| ||| ||| | || | ||||||| |||||||| | ||| ||||| | Sbjct 119151 CTAACGATGAACGATTCTTTGTTTCTCGTGTTTTGGCTTTCTTTGCTGCCTCTGATGGTA 119092 Query 125173 TCGTCAACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCG 125231 | ||||| || || || | || || ||| | ||||| ||| | ||||||| | ||| Sbjct 119091 TTGTCAATGAAAACTTGGTTACTCGTTTCGCACAAGAAGTTCAAG-TTCCAGAAGC-TCG 119034 Query 125232 T-GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 | |||||||||| ||||||||||||||||| ||| | ||| | |||||||||||| || Sbjct 119033 TTGCTTTTACGGGTTCCAAATCATGATTGAAAACATTCACGCTGAAATGTACTCTCTCCT 118974 Query 125291 GATTGACATGTACATTCGCGATCC---GCAACGTAAACACATGCTCTTTAACGCAATCGA 125347 ||||| | |||||||| || || | |||||| | || || || || || || Sbjct 118973 CATTGATACCTACATTCGTGACCCAGTTGAGCGTAAA---TTCCTTTTCAATGCCATTGA 118917 Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAA 125407 ||| | || | | | || || |||| | |||| || || ||||| || | | | Sbjct 118916 CACCATCCCTTGTGTTCGCAAGAAGGGAGACTGGGCTATGCGTTGGATTGAAAATCAAAC 118857 Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 | | | || | || || || || || ||||| || || ||||||||||| || Sbjct 118856 TAGCTGTTTTGGAGAACGCCTTGTTGCTTTTGCTGCCGTGGAAGGTATCTTCTTTTCCGG 118797 Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 | ||||| ||||| || ||| | ||||||||||| | |||||||| |||| | Sbjct 118796 TTCATTTGCTGCCATTTTCTGGTTGAAGAAGCGCGGGTTGATGCCCGGTTTGACCTTCTC 118737 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCG 125587 || || | || || ||||| || || || ||||| |||||| | | | || | Sbjct 118736 CAATGAACTAATCAGCCGTGACGAAGGTCTTCATTGTGATTTTGCCTGTTTGTTATTCAG 118677 Query 125588 CAACTATCTGCGTCCCGAGTGCAGATCCAGC-GATGAAAAGGTCATCAACATTGTAACCG 125646 ||| |||||| | | ||| | |||| | | | |||| | || | Sbjct 118676 GCACT---TGCGTCAC----ACTCGTCCTTCTGATGCCACTATAACTCACATCATTACGG 118624 Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCA 125706 | || || | ||| ||||| || || || || || || | || || ||||||||| Sbjct 118623 AAGCTGTCAAGATTGAACAGGAATTCCTGACGGAGGCCTTGCCCGTTGCTTTGATTGGCA 118564 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766 |||| ||| || |||||| ||||||| || ||||| || ||||| | || | Sbjct 118563 TGAATTGCGCTCTCATGTGCCAGTACATTGAATTTGTTGCTGATCGCTTGTTGGTTGCCC 118504 Query 125767 TGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCAC 125826 || ||| ||| ||||||| | | ||||| || ||||||||| | || || Sbjct 118503 TGCAGTGCCCCAAATTTTACAATGTAGACAATCCTTTCGATTTCATGGACTTGATTTCCT 118444 Query 125827 TAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC--AAACGCTACGGTGT 125884 | | || ||||| ||||| || || |||||||| | |||||| ||| ||| ||||| Sbjct 118443 TGCAAGGAAAGACTAACTTCTTTGAAAAGAAGGTTGGTGAGTACCAAAAGGCT--GGTGT 118386 Query 125885 C 125885 | Sbjct 118385 C 118385 >seq1301 Length=515170 Score = 179 bits (198), Expect = 5e-40 Identities = 365/541 (67%), Gaps = 6/541 (1%) Strand=Plus/Minus Query 96820 CCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGG 96879 ||| ||| || || || ||||| | | |||||| | | | || |||||| || | Sbjct 332902 CCAATGGTCTTGTTCCCATGCTTCGTGTTTACAATAACACGGCTCGTTACGTTGATCAAG 332843 Query 96880 GCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTT 96939 | || ||||| || || || ||| | ||||||||||||||||| |||||||| ||||||| Sbjct 332842 GTGGTAATAAGCGTCCGGGTGCTTTTGCCGTCTACTTGGAACCGTGGCACGCTGACGTTT 332783 Query 96940 TTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGT 96999 |||||||| | || || || ||| |||| ||||| | || || | ||||||| Sbjct 332782 TTGACTTTTTGGATTTGAAGAAGAACACTGGGAAGGAAGAAGTTCGTGCTCGTGACTTGT 332723 Query 97000 TTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGA 97059 | ||||| | ||| | ||||||||||||||||| || | | | | ||||| Sbjct 332722 TCTATGCTTTGTGGATTAATGATTTGTTCATGAAGCGTGTTGAAGCTGACGAAGACTGGT 332663 Query 97060 GCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGG 97119 ||| | ||||| | | || ||| |||| ||| ||||| | || ||||| | Sbjct 332662 CCCTCTTCTGCCCAAATGAATGTCCTGGTTTGTCTGATGTTTGGGGTGCTGAATTTGAAG 332603 Query 97120 CCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCG---ATGCACGAG 97176 | ||| | ||||| | || || | | | | || || | ||| | | Sbjct 332602 CTCTTTACGAGAAGTACGAAAATGAAGGTC---ATGCTCGTCGTGTTGTTCGTGCTCAAA 332546 Query 97177 AACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACA 97236 | || ||||| || || || |||| || || ||||| ||||| ||||| || |||| Sbjct 332545 AGCTTTGGAATGCTATTTTGGAATCTCAAGTTGAAACTGGTACTCCTTACATGCTGTACA 332486 Query 97237 AGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATC 97296 ||||| | ||| ||| ||||| |||| ||||||| |||||||| | |||||| Sbjct 332485 AGGATGCTTGCAATTCCAAGAGCAATCAACAAAACTTGGGAACCATCAAATGTTCCAATT 332426 Query 97297 TGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCAT 97356 |||| || |||||||| || ||| | |||| || |||| || |||||| | |||| | Sbjct 332425 TGTGTACTGAAATTGTTGAATACTCGGCTCCTGATGAGATTGCTGTTTGCAATTTGGCTT 332366 Query 97357 C 97357 | Sbjct 332365 C 332365 >seq368 Length=262043 Score = 134 bits (148), Expect = 2e-26 Identities = 579/883 (66%), Gaps = 58/883 (7%) Strand=Plus/Minus Query 124995 CTGTTTCCCAT-CAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 || |||||||| |||| | || || | ||| | |||||||| || ||| | || || || Sbjct 28864 CTCTTTCCCATTCAGG-AGCACGAAGTGTGGCAGATGTACAAGAAAGCTGAAGCTTCTTT 28806 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGAC 125113 ||||| | || || |||||||| | || ||| | ||||||| || | | || Sbjct 28805 CTGGACAGCTGAGGAACTCGATCTGGTGCACGATCTGAAAGATTGGG---CTAGCCTCAC 28749 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || | ||||| | || || ||| | | || |||||||| | || || || Sbjct 28748 GGACAACGAGCGTTATTTCATTAAGCATGTGCTCGCTTTCTTTGCTGCTAGTGACGGCAT 28689 Query 125174 CGTCAACGACAATCTGTTGACACGA-TTCTCTCAA-GAGTTGACCATTCCAGAGGTGTCG 125231 ||| || || ||||| | || || || | ||| || || | ||||||| ||| Sbjct 28688 CGTGAATGAAAATCTA--GCCATGAATTTTAGCAACGAAGTGCAGGTGCCAGAGGC-TCG 28632 Query 125232 -TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 ||||||||||| || |||||| || ||||| | ||||||||| ||||||| | Sbjct 28631 CTGCTTTTACGGGTTTCAAATCGCAATCGAGAATATACACTCGGAAGTGTACTCGCTTTT 28572 Query 125291 GATTGACATGTACATT-----CGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATC 125345 |||||||| ||| || |||||| || | || ||| || | || ||| Sbjct 28571 GATTGACACGTATATCAAAGACGCGATTGAGAAGG---AC-CAT-CTACTACGTGCTATC 28517 Query 125346 GACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC 125405 || || | || | | ||||| || || |||| | |||| |||| | || Sbjct 28516 GAGACTATCCCTTGCGTCACCAAAAAAGCGCACTGGGCTCTGAAGTGGTGCGAT--CCAC 28459 Query 125406 AAGTCT--TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 |||| || || | || | || |||| || || || || || ||||| || || | Sbjct 28458 GGGTCTCTTCCTATCCAGAACGGCTTTTGGCCTTTGCTGCAGTTGAAGGCATTTTTTTCT 28399 Query 125464 CGGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 | || | || ||| ||||||||||||||||||||||||| | ||||| || || | | Sbjct 28398 CTGGCTCATTCTGCT-CCATCTTTTGGCTCAAGAAGCGCGGTTTAATGCCTGGTCTAA-G 28341 Query 125523 CA---CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTA 125579 | || |||||| |||| || |||||||| | ||| |||||||| || Sbjct 28340 CTTTTCA--AACGAGCTTATTAGCCGGGACGAGGGTATGCACACGGACTTTGCGTGCCTT 28283 Query 125580 CTGTTTCGCAACTATCTGCGTC-CCGAG-TGC-AGA-TCCAGCG---ATGAAAAGGTCAT 125632 ||| ||| | || ||| || || ||| ||| | | ||| | |||| |||| Sbjct 28282 TTGTACTCCAAAT---TG-GTCACCAAGCTGCCAGAATACCGCGTGCACGAAA---TCAT 28230 Query 125633 CAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGT 125692 | | |||||| ||| ||| ||||| ||||| | || || || ||||| Sbjct 28229 -----TCG----CGATGCTGTGGCGATTGAACACGAGTTCGTGCGTGACTCGCTCCCGGT 28179 Query 125693 C-AGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATC 125751 | ||| ||||||||||||||| || |||||| |||||| || |||||||| |||| Sbjct 28178 CGAGC-TGATTGGCATGAACTCGGGCCTCATGTGCCTGTACATTGAATTTGTGGCTGATC 28120 Query 125752 GTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCA 125811 |||| || ||| | || | |||||| ||| | || ||||| || || |||| | Sbjct 28119 GTCTGCTTTACTCGCTGGGAGTATCCAAGATCTACCATGCAAAGAACCCATTCGATTGGA 28060 Query 125812 TGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAA 125854 || || || || || |||| ||||| |||||||| ||||| Sbjct 28059 TGGACATGATCTCTCTCCAGGGCAAGACAAACTTTTTTGAGAA 28017 >seq1342 Length=132421 Score = 102 bits (112), Expect = 1e-16 Identities = 185/266 (70%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 96888 AAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTT 96947 ||||| |||| | | ||| |||| | || || |||||||| || || ||||| ||| Sbjct 2087 AAACGCAAAGGCTCGTTTGCCATCTATCTAGAGCCCTGGCACGCTGATGTGTTTGAATTT 2146 Query 96948 ATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA-CGAGCCAGGGACTTGTTTTATGC 97006 | ||| |||| |||||| ||| || | ||| || || |||| ||||||| ||| Sbjct 2147 CTAGAGTTGCGGAAAAACCACGGCAACGA-GTTGCATCGTGCTCGGGATTTGTTTTTTGC 2205 Query 97007 ACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAAT 97066 | ||||| |||||| | || ||||||||||| | | | |||| ||||| || | Sbjct 2206 CTTGTGGGTCCCAGATCTCTTTATGAAGCGCGTGGAAGCCAATGGCACGTGGAGTCTCTT 2265 Query 97067 GTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTA 97126 || ||| || | || ||||||| ||| || ||||| || | ||||||| || || Sbjct 2266 TTGTCCCAACGAAGCGCCGGGTCTGTACGAATGTTGGGGTGACGCGTTTGAGACCTTGT- 2324 Query 97127 CACGGCC--TACGAGCAAGAGGGCCG 97150 ||| || ||||| || || ||||| Sbjct 2325 -ACGTCCAGTACGAACAGGAAGGCCG 2349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741039145085400