Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq154 104 2e-17 >seq154 Length=42511 Score = 104 bits (114), Expect = 2e-17 Identities = 181/252 (72%), Gaps = 10/252 (4%) Strand=Plus/Minus Query 99670 TCTGTAACCACGGGCTGGAGAAGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACAT 99729 || || ||||| ||| ||| || || || || || | |||| | | | ||||| ||| Sbjct 16597 TCGGTCACCACCGGCGCGAGCAGATGAGGAATGCCCTCGTACACGCTCATCTCGAG-CAT 16539 Query 99730 -TTGGGGTCGATCATGATGAGTTTGACC-CGATCAGGGGTCGCCCG-GTAGAGCAGCGAA 99786 ||||||||||||| ||| || ||| || | || ||| || ||| |||||||| Sbjct 16538 CTTGGGGTCGATCAGGATCAGGCGGACGTCG--CGGGCCTCGGCCTTGTACAGCAGCGAC 16481 Query 99787 ACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAG-CAG 99845 | | ||| | ||||||| ||||||||||| ||||||| ||| |||||||| ||| Sbjct 16480 AGGATCATCGCGTTGATGCCCACCGACTTGCCCGAACCGGTCGTGCCGGCCACCAGGCAG 16421 Query 99846 ATGCGGCATCTTAGCCAGGTTCAGGGA-GATGTCCTTGCCCTCGACGTCCTTGCCCACTG 99904 ||||||||||| |||||| || | | || | ||||| ||| ||||||||||| Sbjct 16420 -TGCGGCATCTTGGCCAGG-TCGGCCACGACCGGCATGCCCACGATGTCCTTGCCCAGGC 16363 Query 99905 CCACGGTCAACG 99916 ||| ||||| || Sbjct 16362 CCATGGTCAGCG 16351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354633842406690