Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1355 98.7 7e-16 >seq1355 Length=184863 Score = 98.7 bits (108), Expect = 7e-16 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || ||||| || |||||||| ||||| ||| | | |||| || || || Sbjct 90452 TGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCCAACTGC 90511 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTT-T 15279 |||||||| | || | |||||| ||||| |||||||||||| ||||| |||||| | Sbjct 90512 TTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTAAATTTCT 90571 Query 15280 GCT-CTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 || ||| || | || || | ||| | || || || | ||||| || || || | Sbjct 90572 TCTGCTTCAC-TTGTCGATCGAGTCG-GAAGCTCAACGTCAAGAGTAATAGTCTTTCCCG 90629 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||| ||| || |||||||| ||||| Sbjct 90630 TCAAAGTCTTGACAAAAATCTGCAT 90654 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || || || |||||||| ||||| ||| | | |||| || || || Sbjct 90680 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCCAACTGC 90739 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| | || | |||||| ||||| |||||||||||| ||||| ||| || Sbjct 90740 TTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTTC 90799 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || || | ||| | || || || | || || || || || ||| Sbjct 90800 TGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTGTCTTTCCCGTC 90859 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | ||| || || ||||| ||||| Sbjct 90860 AAAGTCTTGACGAAAATCTGCAT 90882 Score = 89.7 bits (98), Expect = 4e-13 Identities = 143/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC-GTCTTCTAATTG 15219 |||||||| || || || || |||||||| ||||| | | || || ||| || || || Sbjct 91137 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTTACGGCCGTCCTCCAACTG 91196 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||| | || | |||||| ||||| |||||||||||| ||||| ||| || Sbjct 91197 CTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTT 91256 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || | || || | || ||||| || | || || || || || || Sbjct 91257 CTGCTTCACGTTATCGATCGAGTCAGATGGCTCTACGTCGAGAGTGATTGTCTTTCCCGT 91316 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||| || ||||||||||| ||||| Sbjct 91317 CAGCGTCTTTACAAAAATCTGCAT 91340 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTT-TGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||| || || ||| || |||||||| ||||| | | | | |||| || || || Sbjct 90908 TGAAGGGTCGACTCCTTTCTGGATGTTGTAGTCGCTCAAAGTACGGCCGTCCTCCAACTG 90967 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||| | || | |||||| ||||| |||||||||||| ||||| ||| || Sbjct 90968 CTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTT 91027 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || | || || | ||| | || || || | || || || || || || Sbjct 91028 CTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTGTCTTTCCCGT 91087 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||| || || ||||| ||||| Sbjct 91088 CAAAGTCTTGACGAAAATCTGCAT 91111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362169643562265