Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1355 113 3e-20 seq1422 91.5 9e-14 >seq1355 Length=184863 Score = 113 bits (124), Expect = 3e-20 Identities = 156/217 (72%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTT-TGTATATTGTAATCAGACAAATTGAGTTG 33213 |||||||| | || | |||||||| ||| || || ||||| || |||| | | Sbjct 90896 CGCAACACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTCGCTCAAAGTACGGCC 90955 Query 33214 GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273 ||| ||||| ||||| ||| ||| |||| |||||||||||| | || || ||||| || Sbjct 90956 GTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTT 91015 Query 33274 TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 || |||| ||| || || | | |||| |||| || | |||||| ||||| || Sbjct 91016 GTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGAT 91075 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || |||||||| | ||| || |||||||| |||||| Sbjct 91076 TGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATG 91112 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||||||| | || | |||||||| || || || ||||| || || | | | | Sbjct 90668 CGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCG 90727 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| ||||| ||| ||| |||| |||||||||||| | || || ||||| || Sbjct 90728 TCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTG 90787 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||| || || | | |||| |||| || | |||||| ||||| || Sbjct 90788 TCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATT 90847 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || |||||||| | ||| || |||||||| |||||| Sbjct 90848 GTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATG 90883 Score = 102 bits (112), Expect = 5e-17 Identities = 153/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGA-GTTG 33213 |||||||| | || | |||||||| || || || ||||| || |||| | | | Sbjct 91125 CGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTTACGGCC 91184 Query 33214 GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273 ||| ||||| ||||| ||| ||| |||| |||||||||||| | || || ||||| || Sbjct 91185 GTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTT 91244 Query 33274 TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 || |||| ||| || || | | |||| ||| || | ||||| ||||| || Sbjct 91245 GTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGCTCTACGTCGAGAGTGAT 91304 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| || || ||||| ||||| ||||| Sbjct 91305 TGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCAT 91340 Score = 98.7 bits (108), Expect = 6e-16 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||||||| | || | ||||||||||| || || ||||| || || | | | | Sbjct 90440 CGCAACACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCG 90499 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| ||||| ||| ||| |||| |||||||||||| | || || ||||| || Sbjct 90500 TCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTG 90559 Query 33275 TCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| || ||| || ||| | | |||| |||| | | |||||| ||||| Sbjct 90560 TC-CTAAATTTCTTCTGCTTCACT-TGTCGATCGAGTCG-GAAGCTCAACGTCAAGAGTA 90616 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || |||||||| | ||| || || ||||| |||||| Sbjct 90617 ATAGTCTTTCCCGTCAAAGTCTTGACAAAAATCTGCATG 90655 >seq1422 Length=277306 Score = 91.5 bits (100), Expect = 9e-14 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 33177 ACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAA 33236 |||| || ||||||||||| |||| |||| | | ||| || | ||||| || || Sbjct 271287 ACTCCTTCTGTATATTGTAGTCAGCCAAAGTACGACCGTCCTCGAGCTGCTTGCCGGCAA 271228 Query 33237 ATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTG 33296 |||| | ||| ||||| || | || || ||||| || || ||| || ||||| Sbjct 271227 ATATCAGACGCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTTACGT 271168 Query 33297 TTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTA 33356 | | |||| ||| |||| ||||||| ||| ||||| || || || ||||| || | Sbjct 271167 TATCGATCGAGTCCGAAGGTTCCACGTCCAAAGTGATCGTCTTACCAGTCAGAGTCTTGA 271108 Query 33357 CGAAAATTTGCAT 33369 ||||||||||||| Sbjct 271107 CGAAAATTTGCAT 271095 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| || || |||||||| |||| |||| | | ||| || | ||||| ||| Sbjct 271519 GTAGACTCCTTCTGAATATTGTAGTCAGCCAAAGTACGACCGTCCTCGAGCTGCTTGCCA 271460 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 ||| || | ||| ||||| || | || |||||||| || || ||| || ||| Sbjct 271459 GCAAAGATCAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGGATCTTTTGCTTT 271400 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || | | |||| || ||| | |||||||| || ||||| || || || | ||| Sbjct 271399 ACATTGTCGATCGAATCCGAGGGCTCCACGTCCAGCGTAATCGTCTTACCAGTCAAAGTC 271340 Query 33353 TTTACGAAAATTTGCATG 33370 ||||| |||||||||||| Sbjct 271339 TTTACAAAAATTTGCATG 271322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318769188754170