Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq368 161 9e-35 seq1526 149 5e-31 seq811 87.8 2e-12 >seq368 Length=262043 Score = 161 bits (178), Expect = 9e-35 Identities = 370/549 (67%), Gaps = 6/549 (1%) Strand=Plus/Plus Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || ||||| || ||||| || || || | || || |||||||||||||| ||||| Sbjct 28287 CACGCAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGA 28346 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCCGaaaaaaa 13269 || ||||| | || || || || | |||||| || | |||| || || || || ||||| Sbjct 28347 CCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGG-AGCAGAATGAGCCAGAGAAAAA 28405 Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTC 13329 || ||||||||||| ||||| || | | || ||| ||| | | || Sbjct 28406 AATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGGATC 28465 Query 13330 TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTT 13389 |||||| ||||||| ||||||| | ||||| ||| | || || || Sbjct 28466 GCACCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCACG 28525 Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTA-TACA 13448 | || || | || || | |||| ||||| || || ||||| |||| | |||| Sbjct 28526 TAGTAGATGGTCCTTCTCAATCGCGTCTTTGATATACGTGTCAATCAA-AAGCGAGTACA 28584 Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 ||| || || ||||| || || || ||||| || || ||||| || | |||||||| | Sbjct 28585 CTTCCGAGTGTATATTCTCGATTGCGATTTGAAACCCGTAAAAGCAGCGAGCCTCTGGCA 28644 Query 13509 CCTGAACTTCGGAG-TAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCA 13567 |||| |||||| | |||||| | |||| ||||| || || || |||||||||||| Sbjct 28645 CCTGCACTTCGTTGCTAAAATTCATG-GCTAGATTTTCATTCACGATGCCGTCACTAGCA 28703 Query 13568 GCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAA 13627 ||||| ||||| || | |||||||| || | ||||| || | | | |||| Sbjct 28704 GCAAAGAAAGCGAGCACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGGCTAGCCCAA 28763 Query 13628 TCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTC 13687 ||| | ||| | | ||| | |||||| | ||||| |||||||| |||| ||| Sbjct 28764 TCTTTCAGATCGTGCACCAGATCGAGTTCCTCAGCTGTCCAGAAAGAAGCTTCAGCTTTC 28823 Query 13688 TTATACATC 13696 || |||||| Sbjct 28824 TTGTACATC 28832 >seq1526 Length=132622 Score = 149 bits (164), Expect = 5e-31 Identities = 472/725 (65%), Gaps = 9/725 (1%) Strand=Plus/Plus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || || | ||| | |||||||| ||||| || ||||||| || ||||| Sbjct 118395 TTTTGGTACTCACCAACCTTCTTTTCAAAGAAGTTAGTCTTTCCTTGCAAGGAAATCAAG 118454 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 ||||| |||||||||||||| | | || |||| ||| | | | ||| Sbjct 118455 TCCATGAAATCGAAAGGATTGTCTACATTGTAAAATTTGGGGCACTGCAGGGCAACCAAC 118514 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 || | ||||||||||| || |||||||| ||| | | | || ||||| || || || Sbjct 118515 AAGCGATCAGCAACAAATTCAATGTACTGGCACATGAGAGCGCAATTCATGCCAATCAAA 118574 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATG 13099 || |||| || || || | || | | ||| || | || ||||| ||| ||| Sbjct 118575 GCAACGGGCAAGGCCTCCGTCAGGAATTCCTGTTCAATCTTGACAGCTTCCGTAATGATG 118634 Query 13100 TCTCTTATTACGTTCTCTAATGGAGGATT-TGATAGA--TGCTTAAACATCATACATGCA 13156 | |||| | || | ||| || | ||| | ||| | || | || ||| ||| Sbjct 118635 TGAGTTATAGTGGCATCAGAAGGACGAGTGTGACGCAAGTGCCTGAATAACAAACAGGCA 118694 Query 13157 AAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGC 13216 |||||||| || | ||||| || | || ||||| || || || || || | ||| ||| Sbjct 118695 AAATCACAATGAAGACCTTCGTCACGGCTGATTAGTTCATTGGAGAAGGTCAAACCGGGC 118754 Query 13217 ATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCT 13276 || | ||| || || || | ||| || || |||||||| ||||| ||||| || || ||| Sbjct 118755 ATCAACCCGCGCTTCTTCAACCAGAAAATGGCAGCAAATGAACCGGAAAAGAAGATACCT 118814 Query 13277 TCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCAC 13336 || || || ||||| || | | | ||| ||| | ||| ||| | | || ||||| Sbjct 118815 TCCACGGCAGCAAAAGCAACAAGGCGTTCTCCAAAACAGCTAGTTTGATTTTCAATCCAA 118874 Query 13337 TTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA 13396 | ||||||| | | || | ||| || || | || || || || | ||| Sbjct 118875 CGCATAGCCCAGTCTCCCTTCTTGCGAACACAAGGGATGGTGTCAATGGCATTGA--AAA 118932 Query 13397 TAAtttttttCCTTACT--GTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTG 13454 | ||| | ||| ||| ||| || ||||| || | | |||||||| | Sbjct 118933 GGAATTTACGCTCAACTGGGTCACGAATGTAGGTATCAATGAGGAGAGAGTACATTTCAG 118992 Query 13455 AATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAA 13514 ||||| ||||| ||| |||||||| || ||||| || | ||| |||| || |||| Sbjct 118993 CGTGAATGTTTTCAATCATGATTTGGAACCCGTAAAAGCAACGAGCTTCTGGAACTTGAA 119052 Query 13515 CTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaa 13573 |||| | | ||| | | |||||||| || || || || ||| |||||||| Sbjct 119053 CTTCTTGTGCGAAA-CGAGTAACCAAGTTTTCATTGACAATACCATCAGAGGCAGCAAAG 119111 Query 13574 aaaGC 13578 ||||| Sbjct 119112 AAAGC 119116 >seq811 Length=1194 Score = 87.8 bits (96), Expect = 2e-12 Identities = 174/253 (69%), Gaps = 5/253 (2%) Strand=Plus/Plus Query 13424 TAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAA 13483 |||||||| || ||||| |||| |||| ||||| ||||||||| || |||||| Sbjct 87 TAAGTATCAATTAATAAAGAATACGTTTCGCTGTGAATGTTTTCCATCATAATCTGGAAA 146 Query 13484 CCATAAAAACATCTAGCCTCTG-ATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTT 13542 ||||| ||| | | || || | ||| ||||||||| ||| | || || ||||| Sbjct 147 CCATAGAAAAACTTCGCTTCAGCATA-TTGAACTTCGTTTACAAAGTTCTCAGCCAAGTT 205 Query 13543 TTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtttttt 13602 ||| || || || |||||| ||| ||||| || || | || || ||||| || | | | Sbjct 206 TTCATTTACGATTCCGTCAGAAGCTGCAAAGAATGCTAAAATATGTTTAATGAAATATCT 265 Query 13603 ttCGTTTTCTGACAACT--TTA-ACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTC 13659 ||| | || || | ||| |||||||| ||||||| ||||| | || || Sbjct 266 TTCATCGTCATTCAGTTTGTTATTCCAATCTGTCAAATCTTGGTGCAAATCGATTTCTTC 325 Query 13660 AACGGTCCAAAAA 13672 | | ||||| ||| Sbjct 326 AGCAGTCCAGAAA 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430971028125330