Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq667 91.5 1e-13 >seq667 Length=60273 Score = 91.5 bits (100), Expect = 1e-13 Identities = 279/422 (66%), Gaps = 22/422 (5%) Strand=Plus/Minus Query 99357 CGACAGCGGCGAGGGGTGGCTGTGCGTCAGCACGAGGTGCCGCTTCCCGGCCGCCCCAAA 99416 |||||||||||| || ||| || | ||||| || || | || |||||||||| | | Sbjct 40613 CGACAGCGGCGACGGATGGTTGGCCTGGAGCACCAGATGACCCTGCCCGGCCGCCTCGAT 40554 Query 99417 ------GGCCCG---CTGGGCGTGCGCGCCCCAGAGCATGAACACCATCGGGCCGCCCTG 99467 |||| ||| ||||||||||||||||||| | | ||| | |||| | | Sbjct 40553 CAACGCGGCCTTGGCCTGCGCGTGCGCGCCCCAGAGCAGGTAGACCTT-GGGCGACGCGT 40495 Query 99468 CGCGCTCAGGCGG-GCCAGCACCGCGTGCACCAGCCGCCCCCAGCCCAGGCTGGCGTGCG 99526 | | | | | || || | || ||| | |||| | |||||||| | || || | Sbjct 40494 CCCTCGCCGTCGCCGCGATCAACGCATCGGTCAGCGACTCCCAGCCCTTCTTCGCATGGG 40435 Query 99527 AGCCCGGCGCCCCGCTCCGC-ACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGC 99585 | || | ||| ||| ||| | || || || ||||||||||||||||||||| ||||| Sbjct 40434 ACCCGGCCGCGCCG-TCCTCGACCGTCAGGCTGGTGTTGAGCAGCAGCACGCCACGGCGG 40376 Query 99586 GCCCAGGCCTCCAGGCAGCCGTGCTGCGGCCGCGGGGTCCCGGGGAAGTTCTTCTGCACG 99645 ||||| ||| | ||| || | || | || | ||| | || ||||| Sbjct 40375 GCCCACGCCGCGAGGTGACCCGACATCGCCGGCTGCTGCCC---CAGGTCACGCTGCAGT 40319 Query 99646 GCCGCGTAGATGTTCTGGAGGCTGGGCGGGA---TCGGAACGCCGCGGTTCACGCTGAAG 99702 || | ||||||| | || ||||| | || | || | ||| |||| ||| Sbjct 40318 TCCTTGAAGATGTTGCGCAGCGAAGGCGGCAGCTTCTG-ACCCACCGG--CACGGAGAAC 40262 Query 99703 GCCAGGCCGTGGGCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTG 99762 | ||| || | |||||||| ||| ||| || ||||||||||| | |||||| |||||| Sbjct 40261 GACAGCCCCTCCGCCTGCCCCGGGCCGTGATACGGGTCCTGGCCGACGATGACCACCTTG 40202 Query 99763 AC 99764 || Sbjct 40201 AC 40200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440887268165400