Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1422 145 2e-29 seq1526 138 3e-27 seq1775 122 2e-22 seq1355 102 2e-16 >seq1422 Length=277306 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| || || | ||||| || ||||||||||| ||||||| | ||| | |||||| Sbjct 271535 AAGTACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAGCCAAAGTACGACCGTC 271476 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || |||||||| || || | ||| |||||||| || || ||||| || || Sbjct 271475 CTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTC 271416 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| |||||| |||||||| || | | ||| || || || || || ||||| || Sbjct 271415 CTGGATCTTTTGCTTTACATTGTCGATCGAATCCGAGGGCTCCACGTCCAGCGTAATCGT 271356 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||| | || |||||||| || ||||| Sbjct 271355 CTTACCAGTCAAAGTCTTTACAAAAATTTGCAT 271323 Score = 120 bits (132), Expect = 7e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||| | || ||||| ||||| ||||||| | ||| | |||||| Sbjct 271307 AAGCACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAGCCAAAGTACGACCGTC 271248 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| || || | ||| |||||||| || |||||||| || || Sbjct 271247 CTCGAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTGGAATTCCTTCCTTGTC 271188 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| |||||| ||||| || || | | || |||||| || || | || || || Sbjct 271187 CTGGATCTTTTGCTTTACGTTATCGATCGAGTCCGAAGGTTCCACGTCCAAAGTGATCGT 271128 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||||||| || || || || || || |||||| Sbjct 271127 CTTACCAGTCAGAGTCTTGACGAAAATTTGCATT 271094 >seq1526 Length=132622 Score = 138 bits (152), Expect = 3e-27 Identities = 389/590 (66%), Gaps = 12/590 (2%) Strand=Plus/Minus Query 268712 TTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGG 268771 ||||| || || || ||||| ||| | ||||| |||| | ||||| || ||| Sbjct 119266 TTTCCCATCAAGTATCACGATATTTGGCAATTCTACAAGAAGGCTGAAGCTTCCTTCTGG 119207 Query 268772 ACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGG----AAAAATTTAAAACC 268827 |||| |||||||| || || || | ||| ||| | ||||| |||| || | | | Sbjct 119206 ACTGCCGAAGAAGTTGACCTTTCCAAGGACATAAAACATTGGGACGAAAAGTTGACTAAC 119147 Query 268828 AGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGT 268887 || ||| || ||| | ||| | || | || || ||||| | ||||||||| || Sbjct 119146 -GATGAACGATTCTTTGTTTCTCGTGTTTTGGCTTTCTTTGCTGCCTCTGATGGTATTGT 119088 Query 268888 TAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTT 268947 || ||||| | || ||| ||||| || || |||| ||||| | || || Sbjct 119087 CAATGAAAACTTGGTTACTCGTTTCGCACAAGAAGTTCAAGTTCCAGAAGCTCGTTGCTT 119028 Query 268948 TTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGA 269007 |||||| ||||| || || ||||| ||||| | || |||||| ||| | || || Sbjct 119027 TTACGGGTTCCAAATCATGATTGAAAACATTCACGCTGAAATGTACTCTCTCCTCATTGA 118968 Query 269008 TACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTC--TTCTATGAGAACTATG 269065 ||| || || ||| || | | ||| | ||||| | | || || || Sbjct 118967 TACCTACATTCGTGACC-CAGTTGAGCGTAAATTCC-TTTTCAATGCCATTGACACCATC 118910 Query 269066 GACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGAT--AGCGCGCC-T 269122 ||||| | || || || |||||| || ||||| | || | | || | Sbjct 118909 CCTTGTGTTCGCAAGAAGGGAGACTGGGCTATGCGTTGGATTGAAAATCAAACTAGCTGT 118850 Query 269123 TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTT 269182 | |||||| | | ||||||||||| || || |||||||| |||||||| || || ||| Sbjct 118849 TTTGGAGAACGCCTTGTTGCTTTTGCTGCCGTGGAAGGTATCTTCTTTTCCGGTTCATTT 118790 Query 269183 GCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAA 269242 || || || || ||||||||||| | || | ||||| || || || ||||| || ||| Sbjct 118789 GCTGCCATTTTCTGGTTGAAGAAGCGCGGGTTGATGCCCGGTTTGACCTTCTCCAATGAA 118730 Query 269243 TTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATT 269292 | || ||| | ||||||||| | || || || || || ||||| ||||| Sbjct 118729 CTAATCAGCCGTGACGAAGGTCTTCATTGTGATTTTGCCTGTTTGTTATT 118680 >seq1775 Length=332822 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||||||||| ||||| | | ||| | || ||||| || || || ||| Sbjct 274968 GTCGATTCTTTCTGAATATTGTAGTCTGCCAAAGTCCGGCCATCTTCGAGCTGCTTGCCA 274909 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || ||||| || |||||||| || ||| Sbjct 274908 GCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTGTCCTGAATTTTCTGTTTG 274849 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | | |||| || || || || || ||||| ||||| || || || || Sbjct 274848 ACATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAATGGTCTTGCCCGTCAGGGTC 274789 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || ||||||||||| Sbjct 274788 TTGACGAAAATCTGCATTTT 274769 >seq1355 Length=184863 Score = 102 bits (112), Expect = 2e-16 Identities = 145/200 (73%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTT-CTACCGTCTTCTAGTTGTTTTCC 104421 || || || ||||| || || ||||| | |||| | ||||| || | || || || Sbjct 91143 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTTACGGCCGTCCTCCAACTGCTTGCC 91202 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTT 104480 |||||||||||| | || || ||||| || |||||||| || ||||||||||| ||| | Sbjct 91203 AGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTTCTGC-T 91261 Query 104481 TTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 | || || || | | || || ||||| || || || || ||||| || || || | Sbjct 91262 TCACGTTATCGATCGAGTCAGATGGCTCTACGTCGAGAGTGATTGTCTTTCCCGTCAGCG 91321 Query 104541 TTTTTACAAATATCTGCATT 104560 | |||||||| ||||||||| Sbjct 91322 TCTTTACAAAAATCTGCATT 91341 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| ||||| | ||||| || | || || ||| Sbjct 90686 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCCAACTGCTTGCCA 90745 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 ||||||||||| | || || ||||| || |||||||| || ||||||||||| ||| || Sbjct 90746 GCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTTCTGC-TT 90804 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | | ||| ||| || || || || || || ||||| || || | || Sbjct 90805 CACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTGTCTTTCCCGTCAAAGT 90864 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 90865 CTTGACGAAAATCTGCAT 90882 Score = 95.1 bits (104), Expect = 3e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||| || || ||||| | ||| | ||||| || | || || |||||||||| Sbjct 90922 CTTTCTGGATGTTGTAGTCGCTCAAAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAA 90981 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTT 104488 |||| | || || ||||| || |||||||| || ||||||||||| ||| || || || Sbjct 90982 TTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTTCTGC-TTCACGTTG 91040 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | | ||| ||| || || || || || || ||||| || || | || || || Sbjct 91041 TCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACG 91100 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 91101 AAAATCTGCAT 91111 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || ||||| ||||| | ||||| || | || || ||| Sbjct 90458 GTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCCAACTGCTTGCCA 90517 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||||||||| | || || ||||| || |||||||| || |||| ||| | | || | Sbjct 90518 GCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTAAATTTCTTCTGCT 90577 Query 104483 ACA-TTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | | ||| | | || || || || ||||||||||| || || | || Sbjct 90578 TCACTTGTCGATCGAGTCG-GAAGCTCAACGTCAAGAGTAATAGTCTTTCCCGTCAAAGT 90636 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 90637 CTTGACAAAAATCTGCAT 90654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151366461287820