Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq280 138 7e-28 seq1501 102 5e-17 >seq280 Length=85134 Score = 138 bits (152), Expect = 7e-28 Identities = 218/310 (70%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 72327 GAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCGGTGGTGGCATTG 72386 || || || ||||| | || ||||||| || || | | || || || || || ||| Sbjct 11373 GAAATCTCACGCTCTTTAAAATCGTTGGCAAAAGAGCTGAATGTGCCAGTAGTAGCGTTG 11432 Query 72387 TCACAACTTAATCGATCGCTTGAA-CAGCGTGCGGACAAACGACCGGTAAATTCAGATTT 72445 ||||| | ||||| | ||||| | || || | |||||||| || || | || || || Sbjct 11433 TCACAGTTAAATCG-TGGCTTGGAGCAACGCCCCGACAAACGTCCTGTGATGTCTGACTT 11491 Query 72446 ACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTATCGCGACGA 72505 |||||||| || || ||||||||||| || ||| | ||| ||||| | ||||| || || Sbjct 11492 GCGTGAATCTGGTGCGATTGAGCAGGATGCGGACGTTATTCTGTTTATTTATCGTGATGA 11551 Query 72506 AGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATTATCGGAAAGCAACG 72565 ||||||| |||| |||||| | || |||| || || | ||||| | ||||| || Sbjct 11552 AGTTTATAACCCAGATAGCCCAGACAAAGGCACCGCTGAAATCATTATTGCCAAGCAGCG 11611 Query 72566 AAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATACTCACGGTTTGATAA 72625 || ||||||||||| || | || | |||| ||| ||| | | || ||||| || Sbjct 11612 TAACGGCCCAATTGGTCGTGTTCGCCTGACATTTATCGGTCAACATACCCGCTTTGAAAA 11671 Query 72626 CTATGCCGGT 72635 | ||| ||| Sbjct 11672 TTTTGCAGGT 11681 >seq1501 Length=377221 Score = 102 bits (112), Expect = 5e-17 Identities = 234/347 (67%), Gaps = 13/347 (4%) Strand=Plus/Minus Query 72253 GCATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGC-------AAGAT 72305 || |||| || |||||||||||||| || ||| ||| | || || || | || Sbjct 328831 GCCTGATCATCATCGACTACCTGCAGCTGATGAGCGGCAACG-GCGGCGGTTCCGAGGAG 328773 Query 72306 AACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTA 72365 ||||| || || | | |||||| || || ||||||||| |||| ||||| | Sbjct 328772 AACCGGGCGACGGTGGTGGGCGAGATCTCGCGGGGCCTGAAGGCGCTGGCCAAGGAGCTG 328713 Query 72366 CAAGTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAA 72425 | |||||| | || |||| || || || || ||| | ||| ||| ||||||| Sbjct 328712 CGCTGCCCGGTGATCGCGCTGTCGCAGCTGAACCGCTCGGTGGAAACGCGGCCGGACAAG 328653 Query 72426 CGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATT 72485 || ||| | | || || | || || || || || || ||||||||||| ||| | || Sbjct 328652 CGTCCGATGATGTCCGACCTGCGCGAGTCGGGCGCCATCGAGCAGGACGCGGACATCATC 328593 Query 72486 ATGTTTCTGTATCGCGACGAAGTTTATCACC-CGGA-TAGCGAAATGA--AGGGCATTGC 72541 ||||| | || ||||||| ||| |||| ||| || | || || |||| | || Sbjct 328592 ATGTTCATCTACCGCGACG-AGTACTACACCAAGGACGAGTGCAAGGAGCCGGGCGTGGC 328534 Query 72542 CGAGGTAATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGTGA 72588 ||| | || |||| ||||| || || ||||| | |||||||||| Sbjct 328533 GGAGATCATCATCGCCAAGCAGCGGAACGGCCCGGTGGGCACGGTGA 328487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303227198854965