Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq776 109 7e-19 >seq776 Length=131564 Score = 109 bits (120), Expect = 7e-19 Identities = 311/475 (65%), Gaps = 21/475 (4%) Strand=Plus/Plus Query 164534 ATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAAT 164593 |||| || ||||| |||||||| || |||||| || |||| | || |||| Sbjct 123488 ATGGTCCACCTGGAACTGGTAAAACTTTGATGGCTAGAGAAATTGGTAAAATGCTTAATG 123547 Query 164594 CGC--GACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTC 164651 | | || || |||||||| |||||||| || | |||| ||||| ||| || | || Sbjct 123548 CACATGAACCA--AAAATTGTCAATGGTCCGGAGATTTTGAGCAAATTTGTTGGACAATC 123605 Query 164652 AGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTT 164711 || | ||| | ||| |||||| | |||||||| || || | ||| ||| Sbjct 123606 GGAGGAAAATATCAGAGGCTTGTTTAAAGAGGCTGAGGATGAGTACAAGGCGTGCGGTGA 123665 Query 164712 AGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGG 164771 | || ||||| || ||||| |||| || || | |||||| |||||| | || || Sbjct 123666 TGACAGCAAATTGCACATTATTATTTTCGACGAACTTGATGCTATTTGCAGGCAGCGCGG 123725 Query 164772 -------TGATAATATTATTCATG--------ATGCAGTGGTTAATCAGTTGCTTTCTAA 164816 | || | | || | || | ||||| |||||| ||||||| || Sbjct 123726 CCAAGGCTCATCAGGTGGGACAGGTGTAGGGGATTCTGTGGTCAATCAGCTGCTTTCCAA 123785 Query 164817 AATAGATGGTGTAGAATCC-TTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTG 164875 || |||||||| |||| || ||||||||| | ||| | || |||||||||||| | Sbjct 123786 GATGGATGGTGTC-AATCAATTGAATAATATTCTCATTATCGGGATGACCAACCGAAAGG 123844 Query 164876 ATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGAT 164935 | || ||||| || |||||| | || ||||| || | || | | || ||||| || | Sbjct 123845 ACTTGATTGACGAGGCTTTACTGCGGCCTGGACGCATGGAGGTTCACATGGAAATTGGCT 123904 Query 164936 TACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAAATGAA 164990 | || || ||||| | || ||| | ||| ||||| || |||||||| Sbjct 123905 TGCCAACGGAAACTGGACGTTTGCAGATTATTAAAATTCATACTGCGAAAATGAA 123959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595855874214000