Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2162 152 8e-33 seq1890 143 4e-30 >seq2162 Length=42339 Score = 152 bits (168), Expect = 8e-33 Identities = 191/261 (73%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| |||||| || || |||||||| |||||||| || ||||| Sbjct 30150 GCCAAGCGTCATCGCAAGGTTCTTCGCGACAATATCCAAGGTATCACCAAACCTGCTATT 30209 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| |||||||||||||| || ||||| | ||||| | | || ||||| | Sbjct 30210 CGCCGTCTTGCTCGTCGTGGTGGCGTTAAGCGCATTTCTGGGCTCATTTACGAAGAAA-- 30267 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||||||||| |||| || ||| ||| || | || || || ||| || ||| Sbjct 30268 CGCGGTGTTTTGAAGGTCTTTCTAGAGAACGTGATTCGCGACTCTGTCACCTACACTGAG 30327 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| || ||||||| | || ||||| | || |||||||| Sbjct 30328 CACGCGCGCCGTAAAACTGTGACTGCCATGGACGTAGTATATGCCCTTAAGCGTCAAGGT 30387 Query 16673 CGTAAGATTTATGGTTTTGGA 16693 || | | || || |||||| Sbjct 30388 CGCACTCTGTACGGCTTTGGA 30408 >seq1890 Length=541308 Score = 143 bits (158), Expect = 4e-30 Identities = 190/261 (73%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGA-TCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||||| | | ||| | || |||||||| ||||| ||||||||||| ||||| Sbjct 373916 GCTAAGCGTCATCGTAAAGTCT-TGCGTGATAACATTCAAGGTATCACCAAGCCCGCTAT 373974 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||||||||| |||||||| || |||||| |||| ||| | |||||||| | Sbjct 373975 TCGCCGTCTGGCTCGCCGTGGTGGTGTTAAGCGTATCTCCAACTTGATTTATGAAGAAAC 374034 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || ||||||| |||| | | |||| || | ||| || || ||| || || Sbjct 374035 CCGCACTGTTTTGCGTGTCTTTTTGGAATCCGTCATTCGTGACTCTGTCACCTACACTGA 374094 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| ||||| || ||||||| | || ||||| | || |||||||| Sbjct 374095 GCACGCGCGCCGTAAAACTGTGACTGCCATGGACGTAGTATATGCCCTTAAGCGTCAAGG 374154 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 374155 TCGCACTTTGTACGGCTTTGG 374175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073220525345