Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq100 513 2e-140 seq1501 86.0 8e-12 seq1880 82.4 1e-10 >seq100 Length=112360 Score = 513 bits (568), Expect = 2e-140 Identities = 724/1009 (72%), Gaps = 6/1009 (1%) Strand=Plus/Plus Query 137877 GATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTTTT 137936 ||||||||| | ||| ||| | ||||||||||| || |||||||| || || | ||| Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGTTTATTATTATTT 28645 Query 137937 CCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCTGG 137996 || || ||||| || || || || ||| ||||||| | || |||||||| ||| Sbjct 28646 CCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTGG 28705 Query 137997 TACACCCACGGGTTGGCGT-CTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTGT 138055 || ||||| || || || || || | | ||||| |||||| | || || ||||| Sbjct 28706 TATACCCATGGCTTAGCTAGCTCCTTTT-TAGAAGGTTGTAATTTTTTAACGGCTGCTGT 28764 Query 138056 TTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 138115 ||| || || ||| || |||||| |||||| | ||||| | ||||| || || | || Sbjct 28765 TTCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGCA 28824 Query 138116 AGGAGATATCGTCCGC-TGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 138174 |||| || | || | ||||| || |||| || || ||||| ||||| || | |||| Sbjct 28825 AGGAAATTTT-TCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACG 28883 Query 138175 GGGCCTTTAGTCTGATTGGATTCATGCTT-CGCCAGTTTGAGATCTCTCGTCTGGTAGGC 138233 | || ||| || |||||||| ||||| || || ||||| || |||| | ||||| Sbjct 28884 GAGCTTTTGCACTAATTGGATTT-TGCTTACGACAATTTGAAATTGCTCGATTAGTAGGA 28942 Query 138234 ATCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTC 138293 || || || ||||| || | ||||| || | || ||||| | || || ||| || Sbjct 28943 ATTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTT 29002 Query 138294 CTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCA 138353 | | |||||||| || ||| | || ||||| ||||| || |||||||| |||||| Sbjct 29003 TTACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGCA 29062 Query 138354 ATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCAT 138413 || || ||||| | | ||| | || || |||||||| ||||| | || || || ||| Sbjct 29063 ATTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCAT 29122 Query 138414 ATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACA 138473 |||||||| || || || | | || | ||| | || ||||| |||||||||||||| Sbjct 29123 ATGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTACT 29182 Query 138474 GTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCT 138533 || ||||||||| | ||||||||||| || | ||||||| |||| ||| ||| ||| Sbjct 29183 GTTGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCCCT 29242 Query 138534 ACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTT 138593 |||||| |||||||| ||||| |||||||| || ||| | | ||||| ||||| ||| Sbjct 29243 ACTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTTTT 29302 Query 138594 GGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATG 138653 ||| | |||||| ||||| | ||| | ||||| |||||||| |||||||| || | Sbjct 29303 GGAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAACC 29362 Query 138654 GGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGAT 138713 ||| | ||| | || || || ||| | || ||||| | ||| |||| || ||||| Sbjct 29363 GGTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGCATTAAACTTACGCGCCTATGAC 29422 Query 138714 TTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAG 138773 || | ||||||||| | || |||||||||||||| |||||||| || ||||| || || Sbjct 29423 TTTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACAAAA 29482 Query 138774 AACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACGAA 138833 || ||| || | |||||||| | | ||||||||| | || || || || ||| Sbjct 29483 AATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACATGAA 29542 Query 138834 AACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGAT 138882 || | | | ||||| ||||| ||||| ||| | || ||||| || |||| Sbjct 29543 AATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGAT 29591 Score = 455 bits (504), Expect = 4e-123 Identities = 648/912 (71%), Gaps = 0/912 (0%) Strand=Plus/Plus Query 135416 GGTTGGTTTGGAACGCTGATGATTCCTACTCTTCTCGCAGCTGCTATCTGCTTTATTGTT 135475 || ||||| ||| ||||||||||||| ||| | ||||| ||| || || ||| | Sbjct 40194 GGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTATC 40253 Query 135476 GCTTTCATCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCT 135535 | ||| ||||| || ||||| || || ||||| || || ||||| || || ||||| || Sbjct 40254 GGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATCC 40313 Query 135536 CTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGC 135595 ||| | || ||||| ||||| || | || | |||| ||| | ||||| || || Sbjct 40314 CTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGGT 40373 Query 135596 CTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGT 135655 |||| || ||||| || ||||||||||||||| ||||||| ||| ||||||| |||||| Sbjct 40374 GTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGGT 40433 Query 135656 CCTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAG 135715 || |||||||| | || || |||||| | | ||||| | ||| | ||||| ||| Sbjct 40434 CCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTGAG 40493 Query 135716 TGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCT 135775 |||||| | | || | || |||||||||||||||| ||| || | || || || Sbjct 40494 TGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTCCA 40553 Query 135776 GTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGAT 135835 || || || || || ||||| ||| | | || || | |||||||| ||| |||| Sbjct 40554 GTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTGAT 40613 Query 135836 GGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACAC 135895 |||||||| | || ||||| || |||||||||| |||| | |||||||| || || || Sbjct 40614 GGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGCAT 40673 Query 135896 AACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTG 135955 ||||| | |||||||| || |||||| || || ||||| || || || ||||| | Sbjct 40674 AACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCATTA 40733 Query 135956 TTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTA 136015 || ||||| ||||| |||||| | || || || || | ||||| || |||| Sbjct 40734 TTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAAGC 40793 Query 136016 GAATCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCT 136075 ||||| | || ||||| ||||| || || ||||||||||| || || || ||||||||| Sbjct 40794 GAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTGCT 40853 Query 136076 GCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCG 136135 ||||| || || ||||| | | || || ||||| || || || ||||| ||||| Sbjct 40854 GCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTTCA 40913 Query 136136 CTACACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTA 136195 ||||||| ||| | ||||| ||||| || || || || ||||| |||| | || | Sbjct 40914 TTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAATT 40973 Query 136196 TCTACGATGGCGTTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAA 136255 ||| ||||| || ||| | || ||||| ||||| || || || ||| | | || Sbjct 40974 AGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAA 41033 Query 136256 GGTCGTGTACTCAACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTG 136315 || | ||| | ||||| ||||||||| | | || | || ||| || || || || Sbjct 41034 GGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAGTA 41093 Query 136316 ATGCACGAGCGT 136327 ||||| || ||| Sbjct 41094 ATGCATGAACGT 41105 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/96 (84%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 163578 GGGGACATGGTGGAATTGGTAGACACACCAGACTTAAAATCTGTTGAGCGTATGCTCGTG 163637 ||||| |||||||||| |||||||||| |||||||||||||||| || |||| ||||| Sbjct 68471 GGGGATATGGTGGAAT-GGTAGACACAACAGACTTAAAATCTGTCGA-TTTATGATCGTG 68528 Query 163638 GGGGTTCAACTCCCCCTGTCCCTATAAATAATAAAA 163673 ||||||||||||| || |||| | || ||||||| Sbjct 68529 AGGGTTCAACTCCCTCTATCCCCAAAATAAATAAAA 68564 >seq1501 Length=377221 Score = 86.0 bits (94), Expect = 8e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 165218 TTGCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTCGTG 165277 ||||||| |||||||||||||||||||| || | || |||| | || | | | | |||| Sbjct 362620 TTGCCCAGGTGGCGGAATTGGTAGACGCACTAGTTTCAGGTACTAGCGGGTAACTCCGTG 362679 Query 165278 GAGGTTCAAGTCCTCTCTTGGGCAC 165302 ||||||| ||||||||| ||||||| Sbjct 362680 GAGGTTCGAGTCCTCTCCTGGGCAC 362704 >seq1880 Length=148611 Score = 82.4 bits (90), Expect = 1e-10 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 165220 GCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTCGTGGA 165279 ||||| |||||||||||||||||||| || | || |||| | || | | | | |||||| Sbjct 115179 GCCCAGGTGGCGGAATTGGTAGACGCACTAGTTTCAGGTACTAGCGGGTAACTCCGTGGA 115238 Query 165280 GGTTCAAGTCCTCTCTTGGGCAC 165302 ||||| ||||||||| ||||||| Sbjct 115239 GGTTCGAGTCCTCTCCTGGGCAC 115261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627951005616000