Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq100 526 6e-145 >seq100 Length=112360 Score = 526 bits (582), Expect = 6e-145 Identities = 689/946 (73%), Gaps = 6/946 (1%) Strand=Plus/Plus Query 19332 GGTTGGTTTGGAGTACTTATGATTCCTT-GCTTACTAGCTGCTACTACTTGCTTTATACT 19390 || ||||| ||||| | ||||||||| |||| || | |||||||| || || || | Sbjct 40194 GGATGGTTCGGAGTTGTGATGATTCCTACGCTTT-TAACAGCTACTACATGTTTCATTAT 40252 Query 19391 CGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTC 19450 || ||||||||||| || || ||||| || ||||| || || |||||||| | || || Sbjct 40253 CGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGATC 40312 Query 19451 GTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGG 19510 || | || |||||||| |||||| | ||| || | |||| || || || ||||| || Sbjct 40313 CCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTGG 40372 Query 19511 ACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGG 19570 | || |||||||| || |||||||| | || | ||||| |||||||| ||||| || Sbjct 40373 TGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTGG 40432 Query 19571 TCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACA 19630 |||||||||||| | || || |||||||||| ||| ||||| || ||| | | Sbjct 40433 TCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTGA 40492 Query 19631 GTGGGAACT-ATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCAC 19689 ||||||| | | ||| | | ||||||||| | || ||||| || || || | | | || | Sbjct 40493 GTGGGAATTAAGCTTTC-GCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTC 40551 Query 19690 CACTATCAGCAGCTCTTGCTGTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTG 19749 || || | ||||| ||||| || | |||| || | || ||||| |||||| || Sbjct 40552 CAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTG 40611 Query 19750 ATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAAC 19809 ||||||||||| | || || || || ||||||||||| ||||| || |||||||| || | Sbjct 40612 ATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGC 40671 Query 19810 ACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTC 19869 | || || | |||||||| || |||||| ||||| ||||| || || || || || Sbjct 40672 ATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCAT 40731 Query 19870 TTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGG 19929 | || ||||| ||||||||| ||| || ||||| || || || ||||| |||| Sbjct 40732 TATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAA 40791 Query 19930 ATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCG 19989 | ||| | || ||||| || || || || ||||| ||||| |||||||||||||| | Sbjct 40792 GCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTG 40851 Query 19990 CTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTT 20049 |||| ||||| || || || ||||| || |||||||| || ||| ||||| || |||| Sbjct 40852 CTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTT 40911 Query 20050 CTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCA-TGGGA 20108 | ||||| ||||| | ||| | | || || ||||| || ||| ||| || || | ||| Sbjct 40912 CATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGG-TTAACTGCATTAGGA 40970 Query 20109 ATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGATGTC 20168 || | || ||||| || ||| | || || ||||||||||| || || | ||||| | Sbjct 40971 ATTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGC 41030 Query 20169 AACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAA 20228 | |||| |||| || ||||| ||| | |||| ||||| || || ||| | ||| Sbjct 41031 CAAGGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAA 41090 Query 20229 GTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCTT 20274 || ||||| || || |||||||||||||||||| | ||| | |||| Sbjct 41091 GTAATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCTT 41136 Score = 80.6 bits (88), Expect = 8e-11 Identities = 117/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 20118 ATGGC-TTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGATGTCAACGGAAA 20176 ||||| ||| ||| | || || ||||||||||| || || | ||||| | | |||| Sbjct 112356 ATGGCCTTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAAGGAAG 112297 Query 20177 GATAATCCCAACATGGGCT-GATGTAT-TAAATAGAGCTAACCTCGGATTTGAAGTTATG 20234 |||| || ||||| ||| ||| |||| ||||| || || ||| | ||||| ||| Sbjct 112296 AGTAATTAACACTTGGGCCAGATATATGTAAACAGAGCAAATCTTGGAATCGAAGTAATG 112237 Query 20235 CACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCTT 20274 || || || |||||||||||||| ||| | ||| | |||| Sbjct 112236 CATGAACGTAATGCTCATAACTT-CCATTAGATCTTGCTT 112198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144437886496740