Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq100 499 5e-136 seq1301 154 2e-32 >seq100 Length=112360 Score = 499 bits (552), Expect = 5e-136 Identities = 681/947 (72%), Gaps = 4/947 (0%) Strand=Plus/Plus Query 211597 AACAGAATCTATGTTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACA 211656 |||||| | || |||| ||||| || ||| | ||||| || ||| || | || || Sbjct 40179 AACAGATTATACATTGGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACT 40238 Query 211657 ACATGCTTTATCGTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAA 211716 ||||| || || | | || |||||||| ||||| || || || || ||||| || || Sbjct 40239 ACATGTTTCATTATCGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAG 40298 Query 211717 CCAGTAGCTGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCT 211776 ||||||||||| || | | ||||| |||||||| || | || || || |||| | Sbjct 40299 CCAGTAGCTGGATCCCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGT 40358 Query 211777 TCAAACGCAATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGG 211836 ||||||||||| ||| | || || |||||||| |||||||| || || ||||||| ||| Sbjct 40359 TCAAACGCAATTGGTGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGG 40418 Query 211837 CTCTACAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCA 211896 | || || |||||||| || || || || | || |||||| | | || | | Sbjct 40419 TTATATAACGGTGGTCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGT 40478 Query 211897 TACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTT 211956 || | || | |||||||| | | || ||||| ||||| |||||||| | |||| Sbjct 40479 TATTTAGGTCGTGAGTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTT 40538 Query 211957 GCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAG 212016 || | ||| || || ||| | ||||| ||||||||| | |||| || | || || Sbjct 40539 GCCTTTTCCGCTCCAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAA 40598 Query 212017 GGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTA 212076 || || || || |||||||||||||| || ||||| || || ||||||||||| || Sbjct 40599 GGAAGTTTTTCTGATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTT 40658 Query 212077 TTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATG 212136 |||||||| || |||||||| | ||||| ||||| || ||||| ||||| || || | Sbjct 40659 TTCCAAGCCGAGCATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTT 40718 Query 212137 TTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGT 212196 || || || ||||||| ||||| |||||||| ||| | || || || ||| |||| ||| Sbjct 40719 TTTGGAGGTTCATTATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGT 40778 Query 212197 GAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACA 212256 ||||| ||| || |||| || ||||| ||||| || |||||||||||||| ||| Sbjct 40779 GAAACTTCTGAAAGCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACA 40838 Query 212257 TATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTC 212316 ||||| || |||||||| || ||||| ||||| ||| | || || || || ||| || Sbjct 40839 TATAATATTGTTGCTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTT 40898 Query 212317 AACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTA 212376 || ||| | |||||||||||| | || ||||||| || | | | |||||| Sbjct 40899 AATAACTCACGTTCATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTA 40958 Query 212377 ACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCA 212436 || | | || || | |||||||| || ||| |||| ||||| ||||| || ||||| Sbjct 40959 ACTGCATTAGGAATTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCG 41018 Query 212437 GTTGTTGAT-GCATCAGGTAAG-GTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAA 212494 || ||||| || || | ||| || || ||||||| ||| || | |||||||||| Sbjct 41019 ATTATTGATAGC--CAAGGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAA 41076 Query 212495 ACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCA 212541 | ||||| || ||||| ||||| ||| | ||||| || ||||||||| Sbjct 41077 ATCTTGGAATCGAAGTAATGCATGAACGTAATGCTCATAACTTCCCA 41123 >seq1301 Length=515170 Score = 154 bits (170), Expect = 2e-32 Identities = 335/498 (67%), Gaps = 4/498 (1%) Strand=Plus/Plus Query 193645 CTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGT 193704 |||| | || ||| | || || |||||||| || |||||| ||||| ||| | |||| Sbjct 131855 CTGAAGTTTACAATTTGGGAGCACAAAGTCACGTCAAAGTTAGTTTTGAAATGGCCGAGT 131914 Query 193705 ATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGG 193764 ||||| | ||||||||||||||||| || | ||||||| || | | | | Sbjct 131915 ATACTGGAGAAGTTGATGCTTTAGGAACGCTGCGTTTACTTGATGCCATCAGGGCTTGTG 131974 Query 193765 GAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGTTC 193824 ||||||| || || ||||| | ||||| ||||| || ||| |||| ||| || Sbjct 131975 GAATGGAAAAGGAAGTTCGTTTTTATCAAGCATCCACTTCTGAATTGTACGGTAAAGTAG 132034 Query 193825 TAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAA 193884 | | || || | | ||||| || || || ||||||| |||||||| || || || | Sbjct 132035 TTGAAACGCCTCAAAGTGAAACTACTCCCTTCTATCCACGTTCTCCTTACGGGGTTGCCA 132094 Query 193885 AGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTT 193944 | |||| ||||||||| | | ||||| || || | || ||| | |||| || Sbjct 132095 AAATGTACTCTTATTGGATTGTAATCAATTACCGAGAAGCTTACGGAATGTTCGCTTGTA 132154 Query 193945 CTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGA 194004 ||| || || |||||||| ||| || | | ||| || ||||| || | |||| Sbjct 132155 ATGGAATCCTTTTCAATCATGAAAGCCCTCGTCGTGGTCGCACTTTTGTTACCAGAAAGA 132214 Query 194005 TTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTT--TATCTTGGTAA 194062 ||| | | | || | || || |||| || |||| || ||| | ||||| Sbjct 132215 TTAGTCGTGCAGTGGCTGAAAT-TCATTTGGGAGTGAG-TGATTGTTTGTATTTGGGTAA 132272 Query 194063 TCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAAT 194122 | | ||||||| | || ||||| || ||| ||||| ||||||| |||||||| || Sbjct 132273 TTTGGATGCTAAACGTGACTGGGGTCATGCACGTGATTACGTTGAAGGAATGTGGTTGAT 132332 Query 194123 GTTGCAACAGGATGAACC 194140 ||| ||||| || ||||| Sbjct 132333 GTTACAACAAGAAGAACC 132350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807533345537400