Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq100 520 1e-142 >seq100 Length=112360 Score = 520 bits (576), Expect = 1e-142 Identities = 693/958 (72%), Gaps = 6/958 (1%) Strand=Plus/Plus Query 170702 TACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTC 170761 ||| |||| ||||| || || | ||||| || ||| |||| ||| || | |||||| Sbjct 40188 TACATTGGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTC 40247 Query 170762 ATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCG 170821 ||| | | || ||||| ||||||||||| || || || ||||| | || ||||| || Sbjct 40248 ATTATCGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCT 40307 Query 170822 GGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCA 170881 || || | |||||||| |||||||| || | || | | |||| |||||||||| Sbjct 40308 GGATCCCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCA 40367 Query 170882 ATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAAC 170941 || || | || || ||||| || |||||||| || |||| || || ||||| || ||| Sbjct 40368 ATTGGTGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAAC 40427 Query 170942 GGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGT 171001 || ||||| || || | | | || |||||| | | || | || || | ||| Sbjct 40428 GGTGGTCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGT 40487 Query 171002 AGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCA 171061 | |||||||| || | | |||||||| | |||||||| | ||| || | || Sbjct 40488 CGTGAGTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCC 40547 Query 171062 GCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTC 171121 || || ||| |||||||| || |||||| | | ||||| | || || || || Sbjct 40548 GCTCCAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTT 40607 Query 171122 TCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCA 171181 |||||||||||||| |||| || ||||| || || ||||||||||| || |||||||| Sbjct 40608 TCTGATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCC 40667 Query 171182 GAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGT 171241 || || |||||| ||||||| || || || ||||| |||||||| || | || || ||| Sbjct 40668 GAGCATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGT 40727 Query 171242 --AGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAA 171299 | | | ||| |||||||||||| ||| |||| || || || | || | || || Sbjct 40728 TCATTATTTTC--TGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTT 40785 Query 171300 CTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACA 171359 |||| | ||| | ||| || || || || || ||||||||||||||||||||||| | Sbjct 40786 CTGAAAGCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATA 40845 Query 171360 TTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACT 171419 ||||||||||||| ||||| ||||| |||||||| || || || ||| || || |||| Sbjct 40846 TTGTTGCTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACT 40905 Query 171420 CTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTA 171479 | |||||||||||||||||| | |||| || || ||||| | | |||||||| | Sbjct 40906 CACGTTCATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCAT 40965 Query 171480 TGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAG 171539 | || || |||||||||| || ||| | |||||||| ||||| || ||||| || | | Sbjct 40966 TAGGAATTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTG 41025 Query 171540 AT-GCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGA 171598 || || || | | || || | || |||| |||| || | ||||||||||| |||||| Sbjct 41026 ATAGCCAAGGAAGAGTAATTAAC-ACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGA 41084 Query 171599 ATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTG 171656 || ||||| ||||||||| | ||||| || ||||||||| |||| || || | | ||| Sbjct 41085 ATCGAAGTAATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCTTTTTCTG 41142 Score = 432 bits (478), Expect = 4e-116 Identities = 712/1024 (70%), Gaps = 25/1024 (2%) Strand=Plus/Plus Query 171807 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 171866 ||||| ||| |||| | ||| | || ||||| | |||||||||||| | ||| | || Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGTTTATTATTATTT 28645 Query 171867 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 171926 || || || || |||| | ||||| ||||| |||| || || || ||||| ||| Sbjct 28646 CCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTGG 28705 Query 171927 TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTAACTGCAGCAGTA 171986 || || ||||| | || ||| | | | || || || |||||||| || || || Sbjct 28706 TATACCCATGGCTTAGCTAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCTGTT 28765 Query 171987 TCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGACCTGAGGCACAA 172046 |||||||| | | || |||||| ||| | || | | |||||||||| || || ||| Sbjct 28766 TCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCGCAA 28825 Query 172047 GGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGA 172106 ||| || || ||||||| || | || || || |||| ||||| || ||||| ||| Sbjct 28826 GGAAATTTTTCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACACGGA 28885 Query 172107 GTCTTTGGACTCATAGGTTTCATGCTTA-GACAGTTTGAGATTGCAGGACTTGTTGGGAT 172165 | |||| ||| || || || |||||| |||| ||||| ||||| || | || || || Sbjct 28886 GCTTTTGCACTAATTGGATT-TTGCTTACGACAATTTGAAATTGCTCGATTAGTAGGAAT 28944 Query 172166 ACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACGAGCATCTTTCT 172225 || |||||||| || ||||||| |||||| || || | || | | ||| | Sbjct 28945 TCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTTTTTT 29004 Query 172226 AATATATCCATTAGGTC-AGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCAGCAA 172284 | | ||||| ||||| | |||| || ||||| || ||||| |||||||| ||||||| Sbjct 29005 ACTTTATCCTTTAGGGCAAGCA-AGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAGCAA 29063 Query 172285 TCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATA 172344 | ||||| | | | ||||| |||| || ||||| ||| || | |||||||| |||| Sbjct 29064 TTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCCATA 29123 Query 172345 TGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAG 172404 ||||||| || || || || | || | || ||||||||||| || |||||||| || | Sbjct 29124 TGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTACTG 29183 Query 172405 TACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTACAA 172464 | | || || | |||||||| || |||| | | | | | Sbjct 29184 TTGAAAATACTCTTTATGAAGA---------------TG-----GAGATGC-AGCAAATA 29222 Query 172465 CTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACTGCTAACA 172524 | || ||||| || ||||| || |||||||| ||| ||| |||| || |||| Sbjct 29223 CATTTAGAGCCTTTACCCCTACTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACA 29282 Query 172525 GATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTA 172584 |||| |||||||| || ||||| |||| ||||| || ||||||| |||||||| ||| Sbjct 29283 GATTTTGGTCACAAATTTTTGGAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTA 29342 Query 172585 TGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTTGCAC 172644 || | || || ||||| | ||| | ||| || | ||||| || ||||| |||||| Sbjct 29343 TGCTATTTGTTCCTGTAACCGGTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGCAT 29402 Query 172645 TTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGT 172704 | ||| | | || || |||||| | || ||||| || ||||||||||||| || || | Sbjct 29403 TAAACTTACGCGCCTATGACTTTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAAT 29462 Query 172705 TTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCAT 172764 | ||||| ||||| || || || ||| || | |||||||| || ||| ||||||| | Sbjct 29463 TCGAAACATTCTATACAAAAAATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTG 29522 Query 172765 CTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACG 172824 | || || || ||||| || | | | || |||||||| || || ||||| || |||| Sbjct 29523 CACAAGACCAGCCACATGAAAATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACG 29582 Query 172825 CACT 172828 | || Sbjct 29583 CGCT 29586 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 171493 AATGGCATTCAACCTTAA-CGGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGA 171550 |||||| || | ||||| |||||| ||||| || ||||| || | ||| || || | | Sbjct 112357 AATGGCCTTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAAGGAA 112298 Query 171551 AAGATTGTACCAACATGGGG-AGATGT-TCTTAACAGAGCAAACCTTGGAATGGAAGTTA 171608 || || || | |||| |||| | | | ||||||||||| |||||||| ||||| | Sbjct 112297 GAGTAATTAACA-CTTGGGCCAGATATATGTAAACAGAGCAAATCTTGGAATCGAAGTAA 112239 Query 171609 TGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTG 171656 |||||||| | ||||| || ||||| ||| |||| || || | | ||| Sbjct 112238 TGCATGAACGTAATGCTCATAACTT-CCATTAGATCTTGCTTTTTCTG 112192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570253367100600