Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1526 172 6e-38 seq811 113 5e-20 >seq1526 Length=132622 Score = 172 bits (190), Expect = 6e-38 Identities = 605/943 (64%), Gaps = 38/943 (4%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 |||||| |||||||| | | ||||| |||| || || |||||| | || || Sbjct 118343 TTAAAAGTCAGCATCAAGAGTGAAAA-----TCTT-TTCTTGTGACATGACACCAGCCTT 118396 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||| || |||| ||| | ||||| || || || |||||||||| ||| || || | || Sbjct 118397 TTGGTACTCACCAACCTTCTTTTCAAAGAAGTTAGTCTTTCCTTGCAAGGAAATCAAGTC 118456 Query 21247 CATAAAATCAAATGGATTTTC-AGATTTAAATATTTTATTACAACCCAGTTCTGATAATA 21305 ||| ||||| || ||||| || | ||| || |||| || ||| | || | Sbjct 118457 CATGAAATCGAAAGGATTGTCTACATTGTAAAATTTGGGG-CACTGCAGGGCAACCAACA 118515 Query 21306 ATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365 | | ||| || |||||||| || || || ||||| | | |||||||| || ||||| Sbjct 118516 AGCGATCAGCAACAAATTCAATGTACTGGCACATGAGAGCGCAATTCATGCCAATCAAAG 118575 Query 21366 TTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATAT 21425 || || | || | |||| || | ||| || ||| ||||| ||| || | Sbjct 118576 CAACGGGCAAGGCCTCCGTCAGGAATTCCTGTTCAATCTTGACAGCTTCCGTAATGATGT 118635 Query 21426 TTATTATCCT------AGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATG 21479 |||| | ||| | || || | || ||| || | || | |||||| | Sbjct 118636 GAGTTATAGTGGCATCAGAAGGACGAGTGTGACGCAAG---TGCCTGAATAACAAACAGG 118692 Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539 ||||||||||||| | |||||| || | || |||| |||||| || || || ||||||| Sbjct 118693 CAAAATCACAATGAAGACCTTCGTCACGGCTGATTAGTTCATTGGAGAAGGTCAAACCGG 118752 Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGC 21599 |||| || || | ||| || ||||| || || | ||||||| || |||||||| || | Sbjct 118753 GCATCAACCCGCGCTTCTTCAACCAGAAAATGGCAGCAAATGAACCGGAAAAGAAGATAC 118812 Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACC-------GTATGTAGATTCTTTATCC 21652 | || ||||||||||| ||||| | ||||| || || | |||| | |||| Sbjct 118813 CTTCCACGGCAGCAAAAGCAACAAGGCGTTCTCCAAAACAGCTAGTTTGATTTTCAATCC 118872 Query 21653 AATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCT 21712 | | ||| ||||| | | |||| | || |||| || || ||||| || Sbjct 118873 A--ACGCAT-----AGCCCAGTCTCCCTTCTTGCGAACACAAGGGATGGTGTCAATGGCA 118925 Query 21713 TTTAAAAGATGAtttt--tttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTAT 21770 || ||||| || ||| ||| || || ||| | | Sbjct 118926 TTGAAAAG--GAATTTACGCTCAACTGGGTCACGAATGTAGGTATCAATGAGGAGAGAGT 118983 Query 21771 ACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTG 21830 ||||||||| || || ||||| ||| || || || |||||||| || | || |||| Sbjct 118984 ACATTTCAGCGTGAATGTTTTCAATCATGATTTGGAACCCGTAAAAGCAACGAGCTTCTG 119043 Query 21831 AACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGG 21890 | |||||| || || || | ||||||||||||| || || |||||| || Sbjct 119044 GAACTTGAACTTCTTGTGCGAAACGAGTAACCAAGTTTTCATTGACAATACCATCAGAGG 119103 Query 21891 CGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT---T 21947 | ||||| || ||||| | | | ||| ||||||| | | || || ||| | Sbjct 119104 CAGCAAAGAAAGCCAAAACACGAGAAACAAAGAATCGTTCATCGTTAGTCAACTTTTCGT 119163 Query 21948 TCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAG 22007 ||||| | || || || || | || |||||||| | ||||| ||| ||| || Sbjct 119164 CCCAATGTTTTATGTCCTTGGAAAGGTCAACTTCTTCGGCAGTCCAGAAGGAAGCTTCAG 119223 Query 22008 CCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAA 22050 |||| || || | ||| ||||| | ||| | || ||||| Sbjct 119224 CCTTCTTGTAGAATTGCCAAATATCGTGATACTTGATGGGAAA 119266 >seq811 Length=1194 Score = 113 bits (124), Expect = 5e-20 Identities = 244/361 (68%), Gaps = 8/361 (2%) Strand=Plus/Plus Query 21769 ATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC 21828 |||| |||| || || ||||| ||| ||||| || || || ||| | | || || Sbjct 107 ATACGTTTCGCTGTGAATGTTTTCCATCATAATCTGGAAACCATAGAAAAACTTCGCTTC 166 Query 21829 TGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACT 21888 | | ||||||| ||| ||| | |||||||||||||||||| ||||| ||| Sbjct 167 AGCATATTGAACTTCGTTTACAAAGTTCTCAGCCAAGTTTTCATTTACGATTCCGTCAGA 226 Query 21889 GGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT---TT 21945 || ||||| ||||| || |||| ||| || ||||||| ||| | || | | | || Sbjct 227 AGCTGCAAAGAATGCTAAAATATGTTTAATGAAATATCTTTCATCGTCATTCAGTTTGTT 286 Query 21946 TTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAAT 22005 ||||||||| ||||||| ||||| | |||||||| ||||| || ||||| | Sbjct 287 ATTCCAATCTGTCAAATCTTGGTGCAAATCGATTTCTTCAGCAGTCCAGAAACTAGC--T 344 Query 22006 AGCCTTTTTATACATAAT--CCAGATATCATTATATATTATTGGAAATATTACAAACCTG 22063 | ||||| || | || ||| ||||||| || | | || ||||| || || || | Sbjct 345 TCCATTTTTTTATACCATTCCCAAATATCATGATGTTTGATAGGAAAAATAACGAAACGA 404 Query 22064 TTATTTGATTCAACTAAAAGTGGTTCCA-TTGATAAAAAATATTATTTTTTACATATTTA 22122 || || ||| ||| | |||||| | |||| | | | | | ||| || || |||| Sbjct 405 TTTTTATTTTCTTGTAAGATTGGTTCTACTTGAGACATGACAATTTTTGTTTAATTTTTA 464 Query 22123 T 22123 | Sbjct 465 T 465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531886405434600