Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1301 329 8e-85 seq1342 188 2e-42 seq368 122 2e-22 seq811 86.0 2e-11 >seq1301 Length=515170 Score = 329 bits (364), Expect = 8e-85 Identities = 1122/1731 (65%), Gaps = 33/1731 (2%) Strand=Plus/Minus Query 363445 GTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTT 363504 |||||||| || || || ||| | ||||||||| || || || || | | || || Sbjct 333218 GTTGAACGTCCTCAACACATGCTCATGCGTGTTTGCATAGGAATGCACGGTACTGACATT 333159 Query 363505 GATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC-ACGCACGCCACGCC 363563 || | || |||||| | || || | | |||| ||||| || |||| | || Sbjct 333158 GACTCGGCTATTGAATCGTACAATTTCATGAGTGAAAA-GTATTTTACTCACGGTTCACC 333100 Query 363564 AACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAAT 363623 || | | | |||| || ||| | |||| || ||||||||||||| | | | || Sbjct 333099 CACCCTCTTCCATGCCGGTACTAATCATCCTCAACTGTCTTCTTGCTTCTTGTTGACGAT 333040 Query 363624 GAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAA 363683 | || || || || || ||||| | ||| || | |||| ||||||| | |||||||| Sbjct 333039 GTCTGATGACTCGATTGATGGTATTTATGAAACTTTAAAGACTTGTGCTTTGATTTCCAA 332980 Query 363684 GAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACATTC 363742 ||| || || |||||| | || ||||| ||||||| | | || ||||| Sbjct 332979 ATCTGCTGGTGGTATTGGTTTGAACATTCACAACATTCGTGCTGCTGGTTCGT-ACATTT 332921 Query 363743 GCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTG 363802 ||||| || | || ||||| || ||||||||||||||||| | | || || | Sbjct 332920 CTGGCACGAATGGTCAATCCAATGGTCTTGTTCCCATGCTTCGTGTTTACAATAACACGG 332861 Query 363803 CGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGC 363862 | | ||||| || || ||||| ||||| || || ||||| | || | || | Sbjct 332860 CTCGTTACGTTGATCAAGGTGGTAATAAGCGTCCGGGTGCTTTTGCCGTCTACTTGGAAC 332801 Query 363863 CTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAAT 363922 | || || || ||||||| ||| | || | ||| ||||| || || || ||| Sbjct 332800 CGTGGCACGCTGACGTTTTTGACTTTTTGGATTTGAAGAAGAACACTGGGAAGGAAGAAG 332741 Query 363923 TGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG 363982 | ||||| ||||| |||||||||| | ||| || ||| || |||||||| || | Sbjct 332740 TTCGTGCTCGTGACTTGTTCTATGCTTTGTGGATTAATGATTTGTTCATGAAGCGTGTTG 332681 Query 363983 AGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTAT 364042 | || | | | ||||| ||||| |||||| | |||||||| ||| | || ||||| | Sbjct 332680 AAGCTGACGAAGACTGGTCCCTCTTCTGCCCAAATGAATGTCCTGGTTTGTCTGATGTTT 332621 Query 364043 GGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGA 364102 |||||| || | || ||||| ||||| ||||| ||| || || | |||||| Sbjct 332620 GGGGTGCTGAATTTGAAGCTCTTTACGAGAAGTACGAAAATGAAGGTCATGCTCGTCGTG 332561 Query 364103 CAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACAC 364162 ||| || || ||||| ||| ||| || |||| || || |||| || || || | Sbjct 332560 TTGTTCGTGCTCAAAAGCTTTGGAATGCTATTTTGGAATCTCAAGTTGAAACTGGTACTC 332501 Query 364163 CCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAA 364222 | || ||| ||||||| ||| | ||||| |||| ||| || || || | || || | Sbjct 332500 CTTACATGCTGTACAAGGATGCTTGCAATTCCAAGAGCAATCAACAAAACTTGGGAACCA 332441 Query 364223 TTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCG 364282 | | ||| | ||||| || ||| |||||||| | ||||| || |||| ||| | Sbjct 332440 TCAAATGTTCCAATTTGTGTACTGAAATTGTTGAATACTCGGCTCCTGATGAGATTGCTG 332381 Query 364283 TATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGAT---GGTACTTTTGACC 364339 | || || | || || || || | || || ||||| || ||| |||||||| Sbjct 332380 TTTGCAATTTGGCTTCTATTGCTTTGCCTGCCTTTGTCAAGGATAAGAACACTTTTGATT 332321 Query 364340 ACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAG-GTTATCGAC 364398 | | | | | | || || | || || || || || | | || ||| Sbjct 332320 TCAAAGAATTGAAACATGTTGCCAAGGTTGTCACCAAGAA-CTTGAATCGTATCATTGAC 332262 Query 364399 AAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGT 364458 |||||||| ||| || | || |||||||||||||||||||| || |||||| Sbjct 332261 GTCAATTATTACCCAGTTGAACAGGCTCGTCGTTCTAATATGCGTCATCGTCCCATTGGT 332202 Query 364459 CTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCT 364518 |||| || || || | ||||| | ||| || || | ||| ||||||||| | Sbjct 332201 ATTGGAGTTCAAGGATTAGCTGATGCTTTCATTCTGATGCGAATGCCATTTGATT---GT 332145 Query 364519 GA---CGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACT 364575 || ||||||| | |||||| | |||||||| || || || | || || || Sbjct 332144 GAACGCGCTCGTCAATTGAATAAGCAAATCTTTGAGACCATCTACTATGGTGCCTTGGAA 332085 Query 364576 GCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTT 364635 ||||| ||||| ||||| ||| | ||| | || ||||| ||| |||| | Sbjct 332084 GCTTCTTGTGAATTGGCTCAAATTGAAGGACACTATCAAACTTACCCGGGTAGCCCTGTG 332025 Query 364636 TCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGG 364695 |||| || || | ||| | |||||||| || || || | | || ||| Sbjct 332024 AGCAAGGGTGTTTTGCAATATGACATGTGGAATGTGACCCCTTCCGAC--TTG----TGG 331971 Query 364696 GATACGCTACGTTCCAACGTTAAGA------AGCATGGTACTCGCAACTCCCTCGTTAC- 364748 ||| | | || || | ||||| | |||||| ||| || | ||| ||||| Sbjct 331970 GATTGGTCAGCTTTGAAGGCTAAGATTTCTGAACATGGTGTTCGTAA-TTCCTTGTTACT 331912 Query 364749 AGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACC 364808 || |||||||| || |||||||| | || || || || |||| || ||||| || || Sbjct 331911 TGCTCCCATGCCGACTGCTTCTACCTCTCAAATTCTTGGTTACAATGAATGCTTTGAGCC 331852 Query 364809 GTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAA 364868 || || ||| |||| | || || ||| | | || ||||| | | || ||| | Sbjct 331851 TTTCACTTCCAACATTTACACTCGTCGTGTTTTAGCTGGTGAATTCCAAATTGTCAATCA 331792 Query 364869 GTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATAT 364928 ||| | | |||||| | | || || ||||| ||| ||||||||| || Sbjct 331791 ATACTTGATGAAGGATTTGACTGAATTGGGATTGTGGAATGAATCCATGAAGAATCGCAT 331732 Query 364929 CATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTAT 364988 ||| || || |||||| || || || ||||| | | || |||| ||||| | Sbjct 331731 CATTGCTGCGGGTGGTTCAGTACAAAAGATTCCCAGCATCCCGCAAGAATTGAAGGACTT 331672 Query 364989 TTACAAAACCGTATGGGAAATTTC-CATGCGAACTC-TCATTGATATGGCGGCCGATCGC 365046 ||||| || || ||||||||||| || || || | ||||| |||| || ||||| Sbjct 331671 GTACAAGACAGTTTGGGAAATTTCTCA--AAAAGTCATTATTGACTTGGCTGCTGATCGT 331614 Query 365047 GGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCC 365106 |||||||| || ||| || || || ||| | ||| | | ||||||| | Sbjct 331613 GGTGCTTTCATTGATCAAAGTCAAAGTTTGAACATTCACATTGCCGAACCAACCTTTTCG 331554 Query 365107 AAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGT 365157 ||| | || || |||||||| ||||| ||||| ||| | ||||| ||| Sbjct 331553 AAGTTGACTTCAATGCATTTTTACGGTTGGAAGCTTGGTTTGAAGACTGGT 331503 >seq1342 Length=132421 Score = 188 bits (208), Expect = 2e-42 Identities = 354/516 (69%), Gaps = 6/516 (1%) Strand=Plus/Plus Query 363640 GAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATT 363699 || || || | |||||| || ||| | ||||| ||||| || || ||||| || Sbjct 1898 GAAGGCATTTATGACACGCTCAAGCAATGTGCGTGCATTTCGAAATGGGCCGGCGGGATC 1957 Query 363700 GGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATAC 363759 || | || ||||| ||||||| ||||| ||||| || ||||| || | Sbjct 1958 GGGATCAGTATGCACAACATTCGTGCCACCAACAGCTACATCCGAGGCACGAACGGGTCG 2017 Query 363760 TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAG 363819 |||||||| | |||| ||| | || || ||| | | || ||| |||||||||| || Sbjct 2018 TCGAATGGCATCATTCCAATGTTGCGCGTCTTTAATGACACGGCGCGGTACGTCGATCAA 2077 Query 363820 GGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATT 363879 ||||| || || |||||||| ||||||| || ||||| ||||| || || ||| | Sbjct 2078 GGTGGCGGGAAACGCAAAGGCTCGTTTGCCATCTATCTAGAGCCCTGGCACGCTGATGTG 2137 Query 363880 TTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAG--GAATTGCGTGCACGTGATC 363937 ||||| ||||| ||| | ||||||||| || || ||| | || ||||| || ||| Sbjct 2138 TTTGAATTTCTAGAGTTGCGGAAAAACCACGGCAACGAGTTGCAT--CGTGCTCGGGATT 2195 Query 363938 TGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATT 363997 |||| | ||| | ||||| | || | ||||||||||||||||| || | | | Sbjct 2196 TGTTTTTTGCCTTGTGGGTCCCAGATCTCTTTATGAAGCGCGTGGAAGCCAATGGCACGT 2255 Query 363998 GGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCG-ATGTATGGGGTGACGACTAT 364056 || |||||||| || ||||| || ||||| | || |||| |||||||||| | | Sbjct 2256 GGAGTCTCTTTTGTCCCAACGAAGCGCCGGGTCTGTACGAATGT-TGGGGTGACGCGTTT 2314 Query 364057 GTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAG 364116 | | | |||| |||| ||| ||| || || || ||||| || ||| ||| Sbjct 2315 GAGACCTTGTACGTCCAGTACGAACAGGAAGGCCGTGCCCGCAAGACCATCAACGCGCAG 2374 Query 364117 AAGCTATGGTTTGCCATCATGGATTCGCAGATTGAG 364152 | ||||||||||| ||| | || | ||||||||| Sbjct 2375 CAACTATGGTTTGCGATCCTCGACGCTCAGATTGAG 2410 >seq368 Length=262043 Score = 122 bits (134), Expect = 2e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 ||||| ||| | || ||||||| |||||||||||||| || ||||| |||| || | Sbjct 28441 GAACGGCTTTTGGCCTTTGCTGCAGTTGAAGGCATTTTTTTCTCTGGCTCATTCTGCTCC 28382 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 ||||||||||| || || || | | ||||| ||||||| |||||||| ||| | ||| Sbjct 28381 ATCTTTTGGCTCAAGAAGCGCGGTTTAATGCCTGGTCTAAGCTTTTCAAACGAGCTTATT 28322 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 ||||| || |||||| | || || || |||||||| Sbjct 28321 AGCCGGGACGAGGGTATGCACACGGACTTTGCGTG 28287 >seq811 Length=1194 Score = 86.0 bits (94), Expect = 2e-11 Identities = 211/315 (67%), Gaps = 9/315 (3%) Strand=Plus/Minus Query 22048 GAGAATAAAGATCGTTTCGTACTATTTCCGATTGTACACGAAGATATTTATGAAGAATAC 22107 || |||||| |||||||||| | ||||| || ||| | ||||||| ||| || Sbjct 415 GAAAATAAAAATCGTTTCGTTATTTTTCCTATCAAACATCATGATATTTGGGAATGGTAT 356 Query 22108 AAGAAAGCAGAAGCTTCCCTATGGGGTGTTTCCGAAATTGATATTTCCACT--GATAAGA 22165 || ||| |||||| | ||| || | ||||| ||| || ||| ||| || Sbjct 355 AAAAAAATGGAAGCTAGTTTCTGGACTGCTGAAGAAATCGAT--TTGCACCAAGATTTGA 298 Query 22166 CGGATTGGCCAAA---ACTTACAGAAAACGAACAACATTTTATCAAATATATTCTAGCAT 22222 | |||||| || ||| | || | ||| | |||| || ||| ||||| |||||| Sbjct 297 CAGATTGGAATAACAAACTGAATGACGATGAAAGATATTTCATTAAACATATTTTAGCAT 238 Query 22223 TCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTAG-TGACTAATTTTGCATCTGAA 22281 ||||||| | | ||||| || || ||| || | | ||| || |||| | ||| Sbjct 237 TCTTTGCAGCTTCTGACGGAATCGTAAATGAAAACTTGGCTGA-GAACTTTGTAAACGAA 179 Query 22282 ATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCAC 22341 ||||||| | || || | | |||||||||| | || || ||||| ||||| ||||| Sbjct 178 GTTCAATATGCTGAAGCGAAGTTTTTCTATGGTTTCCAGATTATGATGGAAAACATTCAC 119 Query 22342 GCGGAAACATATTCT 22356 ||||| |||||| Sbjct 118 AGCGAAACGTATTCT 104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303317446193030