Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_007710.1 Length=46643 Score E Sequences producing significant alignments: (Bits) Value seq2 176 1e-39 >seq2 Length=153960 Score = 176 bits (194), Expect = 1e-39 Identities = 296/424 (70%), Gaps = 12/424 (3%) Strand=Plus/Plus Query 35448 TGAAGTTGCTCGACCCGCGTTTCGGCGATCTGTGGCCGTTGCCGGCCTATGCCACCGAAG 35507 ||||| ||||||||| || | | ||| || | | || ||||| || ||| | Sbjct 110551 TGAAGGTGCTCGACCGCCGCATGGCCGA------GCAGCTCCCCGCCTACGCGACCACCG 110604 Query 35508 CCAGTGCAGGCATGGACCTGCGTGCCGCACTGGAGGCGCCGATGACGTTGCAGCCGGGCG 35567 ||| || ||| |||||||||||||| ||||| | | | || ||| || |||||||| Sbjct 110605 GCAGCGCCGGCCTGGACCTGCGTGCCTGCCTGGACGAGGCCATCACGCTGGCGCCGGGCG 110664 Query 35568 ATGCGGCGCTGATTCCCAGCGGCATCGCGATCCATCTGGCCGACCCGCAGCTGTGCGCGG 35627 || | | |||| | |||| |||| | || ||||| | | ||| || ||| |||| Sbjct 110665 ATACCGTGCTGGTGCCCACCGGCCTGGCCATCCACATCGGCGATGCGGGCCTGGCCGCGA 110724 Query 35628 TGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACGGCATCGTACTCGGCAAC--GGTAC 35685 ||||||||||||||||||| || || || ||||| | || || |||||| ||| Sbjct 110725 TGATCCTGCCGCGCTCGGGCCTGGGTCACAAGCACGGGGTGGTGCTGGGCAACCTGGT-- 110782 Query 35686 CGGCCTCATCGATGCGGATTACCAGGGGTCGTTGTTGATCAGCACCTGGAATCGCGGCCG 35745 || || ||||| |||| ||||||||| | || || ||||| ||||| || ||| Sbjct 110783 GGGGCTGATCGACTCGGACTACCAGGGGCAGCTGATGGTCAGCGTGTGGAACCGTGGCAA 110842 Query 35746 CGAGGCCTTCACCATCGAGCCGGGCGACCGGATTGCGCAGCTGGTGATCCTGCCGGTCGT 35805 || | ||||| ||| ||||| || || || |||||| |||||||| ||||||| || Sbjct 110843 GGACACGTTCACGATCCAGCCGATGGAGCGCATCGCGCAGATGGTGATCGTGCCGGTGGT 110902 Query 35806 GC-GCGTAGGCTTGCGAGTGGTGGACACTTTCGTCGACAGCGCGCGCGGCGCGGGTGGAT 35864 || || | | || || || || || |||| || | | ||||||||| ||| || | Sbjct 110903 GCAGCCGAAG-TTCCGTGTCGTCGATGACTTCGACGCCTCCTCGCGCGGCGAGGGCGGGT 110961 Query 35865 TCGG 35868 |||| Sbjct 110962 TCGG 110965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149132165806650