Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1355 131 2e-25 seq312 129 6e-25 seq1422 122 8e-23 seq1775 113 4e-20 seq1301 105 6e-18 seq1110 93.3 4e-14 >seq1355 Length=184863 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| ||||| ||| | || | |||||||||||| || |||||||| ||||| Sbjct 90655 GCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 90714 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || |||||| | ||||||||| || | |||| ||| |||||||| || || Sbjct 90715 CAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGG 90774 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| ||||| || |||||||| | | || | | |||| | ||| | Sbjct 90775 AATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAAC 90834 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 ||| | || | || || || || | ||| || ||||||||||||||| || Sbjct 90835 GTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATGCCT 90886 Score = 129 bits (142), Expect = 6e-25 Identities = 169/233 (73%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTT-TGAATGTTGTAATCGC 131065 ||| || |||| ||||| ||| | || | ||||||||||||| || |||||||| |||| Sbjct 90883 GCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTCGC 90942 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 ||| || || |||||| | ||||||||| || | |||| ||| |||||||| || | Sbjct 90943 TCAAAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTG 91002 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | |||||||| ||||| || |||||||| | | || | | |||| | ||| | Sbjct 91003 GAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAA 91062 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 ||| | || | || || || || | ||| || ||||||||||||||| || Sbjct 91063 CGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATGCCT 91115 Score = 122 bits (134), Expect = 8e-23 Identities = 165/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| ||||| ||| | || | |||||||||||| || |||||||| ||||| Sbjct 91112 GCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 91171 Query 131067 CATGGTG-CGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || || || |||||| | ||||||||| || | |||| ||| |||||||| || | Sbjct 91172 CAAAGTTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTG 91231 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | |||||||| ||||| || |||||||| | | || | | || | | ||| | Sbjct 91232 GAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGCTCTA 91291 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || | || || || || || || ||||| ||||||||||| Sbjct 91292 CGTCGAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCAT 91340 Score = 113 bits (124), Expect = 4e-20 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||| ||| | || | |||||||| || || |||||||| |||||| Sbjct 90428 CCACCACGCAGGCGCAACACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTC 90487 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| | ||||||||| || | |||| ||| |||||||| || || Sbjct 90488 AGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGA 90547 Query 131128 ATTCCTTCTTTGTCGGTGATTT--TCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||||||| ||||| |||| ||||||| | || || | | |||| | ||| | Sbjct 90548 ATTCCTTCCTTGTCCTAAATTTCTTCTGCTTCACTTG-TCGATCGAGTCGGAAG-CTCAA 90605 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 ||| | |||| || || || || | ||| || || |||||||||||| || Sbjct 90606 CGTCAAGAGTAATAGTCTTTCCCGTCAAAGTCTTGACAAAAATCTGCATGCCT 90658 >seq312 Length=309945 Score = 129 bits (142), Expect = 6e-25 Identities = 178/246 (72%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 145052 TACTGATTGACGACCTGAAACTCGCCGGCC-AACACACGACGCAAATACACGTTAGACGT 145110 |||| || |||| | ||||||||| ||| || || || || |||| ||| ||||| Sbjct 19123 TACTTGTTTACGATCGTAAACTCGCCAGCCCAAGACGCGGCGATTGTACATGTTGGACGT 19064 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 ||||| |||| || ||||| ||||||| |||||||||||||| || ||||||||| Sbjct 19063 AAAGGGCTCAATCGATTCGTTGTTGCCCAAGATTTGAGCGGTCGACGCCGTGGGCATGGG 19004 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCA 145230 ||| ||||| | || || || || || |||| | ||| | |||||| || | |||| Sbjct 19003 CGCGACCAAGAGCGAGTTCCGGAGCCCATGCTGCATGACCTTTTCCTTCAGTGCCGCCCA 18944 Query 145231 ATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCT 145287 |||||| || ||| | | || | ||| |||||||||| | || || || || | || Sbjct 18943 ATCCCAGAGGCCCGATGAC-GCGTGACGCCCCACATGTCAAATTGAAAGATCCCTTGACT 18885 Query 145288 GGCGGG 145293 ||||| Sbjct 18884 CGCGGG 18879 >seq1422 Length=277306 Score = 122 bits (134), Expect = 8e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||||||| || || | || | || |||||||| ||||| ||||| || Sbjct 271550 GCCTCCGCGCAAACGAAGTACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAGC 271491 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || |||||| ||||||||||| || |||| | ||||||||| || || || Sbjct 271490 CAAAGTACGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGG 271431 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | | || | | ||| | || ||| | Sbjct 271430 AATGCCTTCCTTGTCCTGGATCTTTTGCTTTACATTGTCGATCGAATCCGAGGGCTCCAC 271371 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 ||| | |||| || ||||| || | ||| ||||| ||||| |||||| || Sbjct 271370 GTCCAGCGTAATCGTCTTACCAGTCAAAGTCTTTACAAAAATTTGCATGCCT 271319 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||||||| ||||| | || | || ||||||| || || ||||| || Sbjct 271322 GCCTCCGCGCAAACGAAGCACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAGC 271263 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || |||||| ||||||||||| || | || | ||||||||| || || || Sbjct 271262 CAAAGTACGACCGTCCTCGAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTGG 271203 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| ||||| ||| || ||||| | | || | | || | | || | Sbjct 271202 AATTCCTTCCTTGTCCTGGATCTTTTGCTTTACGTTATCGATCGAGTCCGAAGGTTCCAC 271143 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| | || | || ||||| || ||||| || |||||||| ||||| Sbjct 271142 GTCCAAAGTGATCGTCTTACCAGTCAGAGTCTTGACGAAAATTTGCAT 271095 >seq1775 Length=332822 Score = 113 bits (124), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 131007 GCCACCGC---GCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC 131063 |||||||| ||| ||||| ||| | || | ||||| || || ||||| ||||| || Sbjct 275002 GCCACCGCCACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTC 274943 Query 131064 GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGG 131123 || || || || || ||||||||||| || |||| | |||||||||||| || Sbjct 274942 TGCCAAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGG 274883 Query 131124 AGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTC 131183 || || ||||| ||||| |||||||| |||| | || | |||| | || ||| Sbjct 274882 TGGAATCCCTTCCTTGTCCTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTC 274823 Query 131184 GATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | ||| | |||| ||| || || || || || || |||||||||||||| Sbjct 274822 CACGTCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 274772 >seq1301 Length=515170 Score = 105 bits (116), Expect = 6e-18 Identities = 351/536 (65%), Gaps = 15/536 (3%) Strand=Plus/Plus Query 145625 GCGATCGACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTC 145683 || || || |||||||| ||||| || |||| || || | || ||||| || || || Sbjct 332359 GCAATAGAAGCCAAATTGCAAACAGCAATCTCATCAGGAGCCGA-GTATTCAACAATTTC 332417 Query 145684 GGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCA 145743 | ||||||||| ||||||||||||||||| ||||| ||||| || || ||||| Sbjct 332418 AGTACACAAATTGGAACATTTGATGGTTCCCAAGTTTTGTTGATTGCTCTTGGAATTGCA 332477 Query 145744 CGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACG 145803 || |||||||| |||||||| || ||||| || || || | |||| | | | | Sbjct 332478 AGCATCCTTGTACAGCATGTAAGGAGTACCAGTTTCAACTTGAGATTCCA--AAATAGCA 332535 Query 145804 GTGCAA--GTCCTGCGCACGCACCTGCTGCTGGTAGC--GGCCCTCTTCTTCGTATTTCC 145859 | ||| | || ||||| || | | ||| | || || | |||||| ||| Sbjct 332536 TTCCAAAGCTTTTGAGCACGAACAACACGACG--AGCATGACCTTCATTTTCGTACTTCT 332593 Query 145860 TGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGAC 145919 ||| || | ||||| | | ||| | ||| |||| || ||||| | || || | Sbjct 332594 CGTAAAGAGCTTCAAATTCAGCACCCCAAACATCAGACAAACCAGGACATTCATTTGGGC 332653 Query 145920 ACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACA 145979 | | || ||||| | ||| || | || |||| ||| |||||||| | ||||| Sbjct 332654 AGAAGAGGGACCAGTCTTCGTCAGCTTCAACACGCTTCATGAACAAATCATTAATCCACA 332713 Query 145980 GCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCA-TGTTTCGCTTCAAATTA 146038 || || | |||||| || || | | | || |||| |||| |||||||| Sbjct 332714 AAGCATAGAACAAGTCACGAGC-ACGAACTTCTTCCTTCCCAGTGTTCTTCTTCAAATCC 332772 Query 146039 AGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG- 146097 | | | | | ||| |||||||||||||| | |||||||| | || || || Sbjct 332773 AAAAAGTCAAAAACGTCAGCGTGCCACGGTTCCAAGTAGACGGCAAAAGCACCCGGACGC 332832 Query 146098 --TTTGCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 || ||||| || || |||| ||| || |||| || | || || | |||||| Sbjct 332833 TTATTACCACCTTGATCAACGTAACGAGCCGTGTTATTGTAAACACGAAGCATGGG 332888 >seq1110 Length=486086 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 |||||||||||||||| || | || | | || || || || |||||||| || || Sbjct 256292 CCTTTTGAATGTTGTAGTC-CGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAG 256234 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || |||||||||||||| || || || ||||| ||||| |||||||||||| | | Sbjct 256233 ATCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTG 256174 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | | || | | || | ||| | |||| ||| || || || | || || || Sbjct 256173 TCAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACA 256114 Query 131224 AAAATCTGCATGACT 131238 ||||||||||||||| Sbjct 256113 AAAATCTGCATGACT 256099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472000026153600