Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1732 140 2e-28 seq453 122 6e-23 seq151 122 6e-23 seq1731 120 2e-22 seq1571 113 3e-20 seq863 109 4e-19 seq1422 107 1e-18 seq87 102 5e-17 seq1767 93.3 3e-14 seq1775 84.2 1e-11 >seq1732 Length=9078 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 4305 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 4364 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 4365 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4399 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 6761 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 6820 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||| ||| Sbjct 6821 GCCATTATTTAGCTTTA 6837 >seq453 Length=12031 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||| ||||||||||| || |||||| | Sbjct 10872 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCAT 10931 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 10932 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 10966 Score = 84.2 bits (92), Expect = 1e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | ||||||||||||||| |||| |||| | |||||||| |||||||||||| Sbjct 792 CTCTCTTTCCAAAGTTCTTTTCAAATTTCGCTCATGCTACTTGTTTGCTATCGGTCTCAG 851 Query 20007 GGTAATATTTAGCCTT 20022 ||||||||||||| Sbjct 852 ATCAATATTTAGCCTT 867 >seq151 Length=6618 Score = 122 bits (134), Expect = 6e-23 Identities = 86/96 (90%), Gaps = 7/96 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG----GTAATCTCGTT 25957 ||||||||||||| |||||||||||||||||||||||||||||| | ||||||||| Sbjct 2238 AAGCCCGTTCCCT-GGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGAATCTCGTT 2180 Query 25958 AATCCTTTCATGCGCGTCACTAA--TTAGATGACGA 25991 ||||| ||||||||||||||||| ||||||||||| Sbjct 2179 AATCCATTCATGCGCGTCACTAATTTTAGATGACGA 2144 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 230 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 171 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||||| Sbjct 170 CCCAATATTTAGCCTTA 154 >seq1731 Length=8278 Score = 120 bits (132), Expect = 2e-22 Identities = 85/96 (89%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG-ATAGGG-----GGTAATCTCG 25955 |||||||||||||||||||| | ||||||||||||||| |||||| || |||||| Sbjct 6469 AAGCCCGTTCCCTTGGCTGTAGGTTCGCTAGATAGTAGGATAGGGACAGTGGGAATCTCA 6410 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||| |||||||||||||||||||||||||||| Sbjct 6409 TTAATCCATTCATGCGCGTCACTAATTAGATGACGA 6374 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||||||||||||||| |||||||||||| Sbjct 4549 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCCT 4490 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||| ||| Sbjct 4489 ATCCATATTTAGCTTTA 4473 >seq1571 Length=97646 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||| ||||||||||| || |||||| | Sbjct 10152 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCAT 10211 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| | |||||||| Sbjct 10212 TAATCCATTCATGCGCGTCACTATTAGGATGACGA 10246 Score = 87.8 bits (96), Expect = 1e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| | ||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 12298 CTCTATTCTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTATGCTATCGGTCTCGC 12357 Query 20007 GGTAATATTTA 20017 |||||||| Sbjct 12358 ACCAATATTTA 12368 >seq863 Length=9128 Score = 109 bits (120), Expect = 4e-19 Identities = 86/100 (86%), Gaps = 10/100 (10%) Strand=Plus/Minus Query 25902 AAGCCCG-TTCCCTTGGCT-GTGGTTTCGCTAGATAGTAGATAGGGG------GTAATCT 25953 ||||||| ||||||||||| ||||||||||| ||||||||| ||||| | ||||| Sbjct 7915 AAGCCCGGTTCCCTTGGCTTGTGGTTTCGCTGGATAGTAGACAGGGGACAGTGGGAATCT 7856 Query 25954 CGTTAATCCTTTCATGCGCG--TCACTAATTAGATGACGA 25991 ||||||||| |||||||||| |||||||||||||||||| Sbjct 7855 CGTTAATCCATTCATGCGCGTCTCACTAATTAGATGACGA 7816 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 5910 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 5851 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 5850 GCCCGTATTTAGCCTT 5835 >seq1422 Length=277306 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || | |||||| | ||||| || || || | |||||| || |||||||| |||| | Sbjct 271321 CCTCCGCGCAAACGAAGCACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAGCC 271262 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| ||| |||| || | || || ||||||||||| || || || ||||| | || Sbjct 271261 AAAGTACGACCGTCCTCGAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTGGA 271202 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || |||||||| || || | || | || | ||| || Sbjct 271201 ATTCCTTCCTTGTCCTGGATCTTTTGCTTTACGTTATCGATCGAGTCCGAAGGTTCCACG 271142 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || ||||| |||| || || ||||| || ||||| Sbjct 271141 TCCAAAGTGATCGTCTTACCAGTCAGAGTCTTGACGAAAATTTGCAT 271095 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || | |||||| | |||| || || || |||||| ||||||||||| |||| | Sbjct 271549 CCTCCGCGCAAACGAAGTACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAGCC 271490 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| ||| |||| || | || || || ||||| || || || || ||||| | || Sbjct 271489 AAAGTACGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGGA 271430 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| || |||||||| ||||| | || | ||| || || Sbjct 271429 ATGCCTTCCTTGTCCTGGATCTTTTGCTTTACATTGTCGATCGAATCCGAGGGCTCCACG 271370 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | ||||| || ||||| ||||| || || || || || |||||| Sbjct 271369 TCCAGCGTAATCGTCTTACCAGTCAAAGTCTTTACAAAAATTTGCATG 271322 >seq87 Length=14717 Score = 102 bits (112), Expect = 5e-17 Identities = 80/96 (83%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955 ||||||||||||||| ||||| | ||||||||| ||||||||||| | ||||||| Sbjct 7125 TAAGCCCGTTCCCTTAGCTGTAGGTTCGCTAGAAAGTAGATAGGGACAGTAGGAATCTCG 7066 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || ||| |||||||||||||| ||||| ||||||| Sbjct 7065 TTGTTCCATTCATGCGCGTCACAAATTAAATGACGA 7030 >seq1767 Length=130814 Score = 93.3 bits (102), Expect = 3e-14 Identities = 74/85 (87%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGGGTAATCTCGTTAATC 25961 |||||||||||||||||||||| |||| ||||||| || | ||| |||||| |||||| Sbjct 17221 AAGCCCGTTCCCTTGGCTGTGGGTTCG-TAGATAGG-GACGGTGGG-AATCTCATTAATC 17165 Query 25962 CTTTCATGCGCGTCACTAATTAGAT 25986 | |||||||||||||||| |||||| Sbjct 17164 CATTCATGCGCGTCACTAGTTAGAT 17140 >seq1775 Length=332822 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| || | || ||||||||| | || || || || || ||||||||||| || | Sbjct 274999 ACCGCCACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCTGC 274940 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 |||| || | || || | || || || ||||| || || || || || |||| || Sbjct 274939 CAAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGG 274880 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| |||||| |||||| || || ||||| | | |||| || || Sbjct 274879 AATCCCTTCCTTGTCCTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCAC 274820 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 || | ||||| || || ||||||| ||| || ||||| |||||||| || || Sbjct 274819 GTCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCATTTTCTA 274766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334938362104115