Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1422 134 1e-26 seq1355 122 8e-23 seq1775 118 9e-22 >seq1422 Length=277306 Score = 134 bits (148), Expect = 1e-26 Identities = 162/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||||||||||||| || || |||||| |||| ||||| | ||||| | || ||||| Sbjct 271090 GAACAATGCAAATTTTCGTCAAGACTCTGACTGGTAAGACGATCACTTTGGACGTGGAAC 271149 Query 25054 CGTCTGACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | || ||| | ||||| | || | |||||||| ||| ||||| ||||| ||||||||| Sbjct 271150 CTTCGGACTCGATCGA-TAACGTAAAGCAAAAGATCCAGGACAAGGAAGGAATTCCACCT 271208 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || || ||||| | || ||||||||||| || | || || | ||| ||| ||| || Sbjct 271209 GATCAGCAGCGTCTGATATTTGCCGGCAAGCAGCTCGAGGACGGTCGTACTTTGGCTGAC 271268 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || || || | ||||| || | ||||| Sbjct 271269 TACAATATACAGAAGGAGTGTACGCTCCACCTGGTGCT 271306 Score = 134 bits (148), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||||||||||||||| ||||| | || || | || |||||| | || Sbjct 271323 ATGCAAATTTTTGTAAAGACTTTGACTGGTAAGACGATTACGCTGGACGTGGAGCCCTCG 271382 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || | ||||| || || |||||||| ||| ||||| ||||| ||||||||||| | Sbjct 271383 GATTCGATCGA--CAATGTAAAGCAAAAGATCCAGGACAAGGAAGGCATTCCACCTGATC 271440 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||| ||||| || | || || | ||| ||| ||| || |||| Sbjct 271441 AGCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGTACTTTGGCTGACTACA 271500 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 ||||||| || || || ||||| || Sbjct 271501 ATATTCAGAAGGAGTCTACGCTCCA 271525 >seq1355 Length=184863 Score = 122 bits (134), Expect = 8e-23 Identities = 154/208 (74%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || ||||||||||| |||| || || | ||||| |||| || ||| | Sbjct 91343 ACAATGCAGATTTTTGTAAAGACGCTGACGGGAAAGACAATCACTCTCGACGTAGAGCCA 91284 Query 25056 TCTGACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| | ||||| | || ||||||| || || ||||| ||||| ||||||||||| Sbjct 91283 TCTGACTCGATCGA-TAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGA 91225 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG-CACTGTGGGCGATT 25173 ||| || || | |||||||| ||||| || || || || | || ||| || |||| | Sbjct 91224 CCAGCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTAACTTTGAGCGACT 91165 Query 25174 ACAATATTCAAAAAGAATCCACGCTACA 25201 |||| || || || || || || || || Sbjct 91164 ACAACATCCAGAAGGAGTCGACCCTTCA 91137 Score = 111 bits (122), Expect = 1e-19 Identities = 167/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | || || | || || ||| | || Sbjct 90654 ATGCAGATTTTTGTCAAGACTTTGACGGGAAAGACTATTACTCTTGACGTTGAG-CTTCC 90596 Query 25059 GACACTATCGAGTCACTGAAGCAAAA--AATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| | ||||| | ||||||| || ||| ||||| ||||| ||||||||||||| Sbjct 90595 GACTCGATCGACA-AGTGAAGCAGAAGAAATTTAGGACAAGGAAGGAATTCCACCTGACC 90537 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | |||||||| ||||| || || || || | || ||| || |||| |||| Sbjct 90536 AGCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTACA 90477 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATT 25230 | || || ||||| || || || || | ||| | | || | || ||||||| Sbjct 90476 ACATCCAGAAAGAGTCGACTCTTCACCTTGTGTTGCGCCTGCGTGGTGGAAATT 90423 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | ||||| | || || ||| | || Sbjct 90882 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCC 90823 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | ||||| ||||||| || || ||||| ||||| |||||||||||||| Sbjct 90822 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCAG 90763 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||| ||||| || || || || | || ||| || |||| ||||| Sbjct 90762 CAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTACAAC 90703 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 90702 ATCCAGAAGGAGTCGACCCTTCA 90680 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | ||||| | || || ||| | || Sbjct 91111 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCC 91052 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | ||||| ||||||| || || ||||| ||||| |||||||||||||| Sbjct 91051 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCAG 90992 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||| ||||| || || || || | || ||| || |||| ||||| Sbjct 90991 CAACGTCTAATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTTTGAGCGACTACAAC 90932 Query 25179 ATTCAAAAAG 25188 || || |||| Sbjct 90931 ATCCAGAAAG 90922 >seq1775 Length=332822 Score = 118 bits (130), Expect = 9e-22 Identities = 151/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| |||| || || |||| || | || |||||| | || Sbjct 274771 AATGCAGATTTTCGTCAAGACCCTGACGGGCAAGACCATTACGCTGGACGTGGAGCCCTC 274830 Query 25058 TGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || | || || || || || || ||||| ||||| |||||||||||||| ||| Sbjct 274831 GGATAGCATTGA--CAATGTCAAACAGAAAATTCAGGACAAGGAAGGGATTCCACCCGAC 274888 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||| ||||| || | ||||||| || ||| ||| || ||| Sbjct 274889 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGGACTTTGGCAGACTAC 274948 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 |||||||| |||||||| ||||| || Sbjct 274949 AATATTCAGAAAGAATCGACGCTGCA 274974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433316566234475