Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq100 578 4e-160 >seq100 Length=112360 Score = 578 bits (640), Expect = 4e-160 Identities = 741/1012 (73%), Gaps = 12/1012 (1%) Strand=Plus/Plus Query 167312 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTT 167371 ||||||||||| ||| ||| | ||||| ||||| || |||||||| ||| | | ||| Sbjct 28586 GATGACTGGCTAAAAAAAGACAGATTTGTATTTGTAGGATGGTCTGGTTTATTATTATTT 28645 Query 167372 CCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGTTACGAGCTGG 167431 || || ||| | || | || || ||| ||||||| | || |||||||| ||| Sbjct 28646 CCGTGCGCGTATTTAGCTCTAGGAGGATGGTTTACTGGAATCACATTTGTTACCTCTTGG 28705 Query 167432 TATACCCACGGGTTGGCGTCTAGTTACCTT---GAGGGTGCTAATTTTCTCACGGCAGCA 167488 |||||||| || || || ||| | | || || ||| ||||||| | ||||| || Sbjct 28706 TATACCCATGGCTTAGC---TAGCTCCTTTTTAGAAGGTTGTAATTTTTTAACGGCTGCT 28762 Query 167489 GTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 167548 || ||||| || ||| | |||||| |||||| | ||||| | ||||| || || | Sbjct 28763 GTTTCAACACCAGCTAATAGTATGGGACATTCTTTACTTCTTTTATGGGGACCAGAAGCG 28822 Query 167549 CAGGGGGATTTCATCAGG-TGGTGCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCA 167607 || || |||| || | |||| | |||| || || ||| | ||||| || | || Sbjct 28823 CAAGGAAATTTT-TCTGTATGGTTTAAAATTGGAGGTCTTTGGACATTTGTTGCCTTACA 28881 Query 167608 CGGAGCCTTTGCTCTCATAGGATTTATGCTT-CGGCAATTTGAGATAAGTAGACTAGTAG 167666 |||||| ||||| || || |||||| ||||| || |||||||| || | || |||||| Sbjct 28882 CGGAGCTTTTGCACTAATTGGATTT-TGCTTACGACAATTTGAAATTGCTCGATTAGTAG 28940 Query 167667 GTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTT 167726 | || || ||||||||||| | || ||||| | ||||| || | ||||| || |||| Sbjct 28941 GAATTCGACCTTACAATGCTTTAGCATTTTCAGCACCGATCGCCATTTTTGTTTCCGTTT 29000 Query 167727 TTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAG 167786 || | | |||||| | || || | || ||||| |||||||| ||||||||||||| Sbjct 29001 TTTTACTTTATCCTTTAGGGCAAGCAAGCTGGTTTTTTGCACCAAGTTTTGGTGTTGCAG 29060 Query 167787 CGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCC 167846 | || ||| |||| |||||||| |||| || |||||||| ||||| | || || |||| Sbjct 29061 CAATTTTTCGATTTTTACTATTCTTACAAGGATTCCATAATTGGACATTAAATCCATTCC 29120 Query 167847 ATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTA 167906 ||||||||||||||||||| | |||| | ||| || || | |||||| ||||||| || Sbjct 29121 ATATGATGGGAGTTGCTGGAGTATTAGGAGCTGCGTTACTATGTGCAATTCATGGTGCTA 29180 Query 167907 CAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATA 167966 | || || |||||||| ||||||||||| || |||||| || || | ||| ||| Sbjct 29181 CTGTTGAAAATACTCTTTATGAAGATGGAGATGCAGCAAATACATTTAGAGCCTTTACCC 29240 Query 167967 CGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTT 168026 | ||||| || ||||| ||||||||||| || || ||| |||| ||||| ||||||| Sbjct 29241 CTACTCAATCGGAAGAAACATATTCCATGGTTACAGCCAACAGATTTTGGTCACAAATTT 29300 Query 168027 TTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCA 168086 |||| | ||||| |||||| | ||||| ||||| |||||||| || |||||||| | Sbjct 29301 TTGGAGTAGCTTTTTCCAATAAAAGATGGTTACACTTTTTTATGCTATTTGTTCCTGTAA 29360 Query 168087 TGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTT-CGTGCTTAT 168145 || | ||| |||| | || || || | || || ||| |||| ||| || || ||| Sbjct 29361 CCGGTTTATGGGCAAGCGCAATAGGAATTGTAGGACTTGCA-TTAAACTTACGCGCCTAT 29419 Query 168146 GACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACG 168205 |||||| | || || ||| | |||||||||| ||||| || || ||||| |||||||| Sbjct 29420 GACTTTATTTCGCAAGAATTACGAGCAGCAGAAGATCCGGAATTCGAAACATTCTATACA 29479 Query 168206 AAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACAT 168265 ||||| || | | ||||||||| | | ||||||||| || |||||| |||||| Sbjct 29480 AAAAATATTATTTTAAATGAAGGAATAAGATTATGGATGGCTGCACAAGACCAGCCACAT 29539 Query 168266 GAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGAT 168317 ||||| | | |||| |||||||| ||||| ||| | || ||||| || |||| Sbjct 29540 GAAAATTATATATTTCCAGAAGAGGTATTACCACGTGGAAACGCGCTTTGAT 29591 Score = 480 bits (532), Expect = 9e-131 Identities = 673/944 (71%), Gaps = 0/944 (0%) Strand=Plus/Plus Query 166094 TTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCG 166153 |||| ||||| || |||||||||| || || || |||| || | |||||||| Sbjct 40192 TTGGATGGTTCGGAGTTGTGATGATTCCTACGCTTTTAACAGCTACTACATGTTTCATTA 40251 Query 166154 TCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCT 166213 ||| ||| | || || ||||| || || || ||||| || || ||||| ||||| || | Sbjct 40252 TCGGTTTTATCGCAGCTCCTCCAGTAGACATTGATGGAATTCGCGAGCCAGTAGCTGGAT 40311 Query 166214 CTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTG 166273 | ||| | ||||| |||||||| || | || | || | || || |||||||||| Sbjct 40312 CCCTATTATATGGAAACAACATTATTACAGGATCAATTATTCCTAGTTCAAACGCAATTG 40371 Query 166274 GTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTG 166333 || |||| || ||||| || |||||||| || || ||||||||||| | |||||||||| Sbjct 40372 GTGTTCATTTTTATCCTATATGGGAAGCTGCTTCTATTGATGAATGGTTATATAACGGTG 40431 Query 166334 GTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTG 166393 |||| | || || |||| || |||||| | | || | | || | ||||||| Sbjct 40432 GTCCATATCAACTGATAGTATTACACTTCTTAACAGGTGTAGCTTGTTATTTAGGTCGTG 40491 Query 166394 AATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCAC 166453 | |||||||| | ||| | || ||||| |||||||||| || || | || || | Sbjct 40492 AGTGGGAATTAAGCTTTCGCTTAGGAATGCGCCCTTGGATTTTTGTTGCCTTTTCCGCTC 40551 Query 166454 CTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 166513 | || || |||||| | || || ||| | | ||||| | || ||||| ||| |||| Sbjct 40552 CAGTAGCTGCAGCAACAGCTGTATTCTTAATTTATCCGATAGGACAAGGAAGTTTTTCTG 40611 Query 166514 ACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGC 166573 | | ||||| | || || || || || |||| |||| | || |||||||| |||| Sbjct 40612 ATGGTATGCCTTTAGGGATTTCAGGGACTTTTAACTTCATGTTAGTTTTCCAAGCCGAGC 40671 Query 166574 ACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCAC 166633 | ||||| | ||||| || || || ||| |||||||| || || || || || ||| Sbjct 40672 ATAACATATTAATGCATCCATTTCACATGGCTGGTGTAGCTGGAGTTTTTGGAGGTTCAT 40731 Query 166634 TTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAA 166693 | || || ||||||||||| | | || ||||| || | | ||||| || |||||| Sbjct 40732 TATTTTCTGCAATGCACGGATCTTTAGTAACTTCATCAATTATTCGTGAAACTTCTGAAA 40791 Query 166694 CTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGG 166753 || || | ||| ||||| ||||| ||||| ||||||||||| || || || || || | Sbjct 40792 GCGAATCACCAAATTATGGATACAAATTTGGACAAGAAGAAGAAACATATAATATTGTTG 40851 Query 166754 CTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCT 166813 ||||||| || || ||||| | | || || |||||||| || || ||||| || | Sbjct 40852 CTGCTCACGGATATTTCGGAAGATTAATTTTTCAATACGCAAGTTTTAATAACTCACGTT 40911 Query 166814 CGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTG 166873 | | ||||||||| | || |||||||| || || || || ||||| ||||| | || Sbjct 40912 CATTACACTTCTTCTTAGCTGCATGGCCAGTAGTTGGAATTTGGTTAACTGCATTAGGAA 40971 Query 166874 TTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTC 166933 |||| || ||||| || ||| | ||||| || ||||| || || || || || ||| | | Sbjct 40972 TTAGTACAATGGCCTTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCC 41031 Query 166934 AGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAG 166993 | || | || | ||||||||||||||| | | ||| | || ||| || || |||| Sbjct 41032 AAGGAAGAGTAATTAACACTTGGGCAGATATTGTAAACAGAGCAAATCTTGGAATCGAAG 41091 Query 166994 TAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCT 167037 ||||||| || ||||||||||| |||||||| | ||||||||| Sbjct 41092 TAATGCATGAACGTAATGCTCATAACTTCCCATTAGATCTTGCT 41135 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 166888 TTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTC 166947 || ||| | ||||| || ||||| || || || || || ||| | || || | || | Sbjct 112349 TTTAACTTAAACGGATTTAACTTTAATCAATCGATTATTGATAGCCAAGGAAGAGTAATT 112290 Query 166948 AACACTTGGGC-AGATGTCC-TCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGC 167005 ||||||||||| |||| | | ||| | || ||| || || ||||||||||| || | Sbjct 112289 AACACTTGGGCCAGATATATGTAAACAGAGCAAATCTTGGAATCGAAGTAATGCATGAAC 112230 Query 167006 GTAATGCTCACAACTTCCCTCTGGATCTTGCT 167037 |||||||||| ||||||| | | ||||||||| Sbjct 112229 GTAATGCTCATAACTTCCAT-TAGATCTTGCT 112199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567216649284000