Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1526 210 2e-49 seq368 174 2e-38 >seq1526 Length=132622 Score = 210 bits (232), Expect = 2e-49 Identities = 596/908 (66%), Gaps = 12/908 (1%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||| |||||| |||||||| || ||||| || ||||||||||| || |||||||||| Sbjct 118382 CATGACACCAGCCTTTTGGTACTCACCAACCTTCTTTTCAAAGAAGTTAGTCTTTCCTTG 118441 Query 92850 CAAAGATATCGAATTCACTAGT--GATTGGATTCTTGGCGTTATAATACTTTT--CACCG 92905 ||| || ||| | | || | || ||||| | | || ||| | || ||| | Sbjct 118442 CAAGGAAATCAAGTCCATGAAATCGAAAGGATTGTCTACATTGTAAAATTTGGGGCACTG 118501 Query 92906 ATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAA 92965 || | ||| || | |||||| |||||||| |||||||| |||| | | | ||| Sbjct 118502 --CAGGGCAACCAACAAGCGATCAGCAACAAATTCAATGTACTGGCACATGAGAGCGCAA 118559 Query 92966 TTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACG 93025 ||||| || | | | || || | || || |||| ||| || | || || || Sbjct 118560 TTCATGCCAATCAAAGCAACGGGCAAGGCCTCCGTCAGGAATTCCTGTTCAATCTTGACA 118619 Query 93026 GCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTT-TGT-ACGACA-TAATTG 93082 ||||| | | ||| | ||| | || | || ||| ||| | | || Sbjct 118620 GCTTCCGTAATGATGTGAGTTATAGTGGCATCAGAAGGACGAGTGTGACGCAAGTGCCTG 118679 Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142 | | || || ||||| || ||| | ||||||||| || || | |||||| | Sbjct 118680 AATAACAAACAGGCAAAATCACAATGAAGACCTTCGTCACGGCTGATTAGTTCATTGGAG 118739 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 || || ||||| || | || || || ||||| | ||| || || | |||||| ||| Sbjct 118740 AAGGTCAAACCGGGCATCAACCCGCGCTTCTTCAACCAGAAAATGGCAGCAAATGAACCG 118799 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA 93262 ||||| || |||||||||||||| ||||| || |||| ||||| ||||| | Sbjct 118800 GAAAAGAAGATACCTTCCACGGCAGCAAAAGCAACAAGGCGTTCTCCAAAACAGCTAGTT 118859 Query 93263 TTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCG 93322 | | | ||||| | |||||| || | || || || |||||| | || || Sbjct 118860 TGATTTTCAATCCAACGCATAGCCCAGTCTCCCTTCTTGCGAACACAAGGGATGGTGTCA 118919 Query 93323 ATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGA 93382 || || || || ||| | | ||||| | | || || ||||| ||||| || | ||| Sbjct 118920 ATGGCATTGAAAAGGAATTTACGCTCAACTGGGTCACGAATGTAGGTATCAATGAGGAGA 118979 Query 93383 GAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCT 93442 || |||||||||| || | || || || |||||||| ||||| || || | |||| Sbjct 118980 GAGTACATTTCAGCGTGAATGTTTTCAATCATGATTTGGAACCCGTAAAAGCAACGAGCT 119039 Query 93443 TCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCG 93502 || | | || |||||||| | || | || | ||||||||||| |||||||| Sbjct 119040 TCTGGAACTTGAACTTCTTGTGCGAAACGAGTAACCAAGTTTTCATTGACAATACCATCA 119099 Query 93503 GATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTT- 93561 || || ||||| |||||||| | | | | ||| | ||||| | | | ||| Sbjct 119100 GAGGCAGCAAAGAAAGCCAAAACACGAGAAACAAAGAATCGTTCATCGTTAGTCAACTTT 119159 Query 93562 --ATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 ||||||| || || || ||||| || ||||||||| ||||||| || || ||| Sbjct 119160 TCGTCCCAATGTTTTATGTCCTTGGAAAGGTCAACTTCTTCGGCAGTCCAGAAGGAAGCT 119219 Query 93620 TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGA 93679 || || || ||||| | | ||| || || ||||| | || ||||| | ||| ||||| Sbjct 119220 TCAGCCTTCTTGTAGAATTGCCAAATATCGTGATACTTGATGGGAAAGAGGACGAAACGG 119279 Query 93680 TTAGGGTT 93687 || || || Sbjct 119280 TTGGGATT 119287 >seq368 Length=262043 Score = 174 bits (192), Expect = 2e-38 Identities = 407/608 (67%), Gaps = 16/608 (3%) Strand=Plus/Plus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| | |||||||||||| || || | ||| ||||| || || | ||| || Sbjct 28277 GTACAAAAGGCACGCAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGA 28336 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-C 93200 || ||| ||| || | | || || |||||||||||||| || || ||| || | | Sbjct 28337 AAAGCTTAGACCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGGA-GCAGAATGAGC 28395 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 |||| ||||| || ||||| || || ||||| |||| || ||||| | | | || Sbjct 28396 CAGAGAAAAAAATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATA------GG 28449 Query 93261 AATTA--CTGCTGATC----CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTA 93314 || | | |||| || || | |||||| | |||||||| | | ||||| | Sbjct 28450 AAGAGACCCGTGGATCGCACCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGA 28509 Query 93315 GTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGA 93374 || |||||||| | ||| | || ||| || ||| || || || || | Sbjct 28510 TAGTCTCGATAGCACGTAGTAGATGGTCCTTCTCAATCGCGTCTTTGATATACGTGTCAA 28569 Query 93375 TTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAAC 93434 | || || || |||| ||| || || | |||||| ||||| ||||| || ||||| || | Sbjct 28570 TCAAAAGCGAGTACACTTCCGAGTGTATATTCTCGATTGCGATTTGAAACCCGTAAAAGC 28629 Query 93435 ATCTAGCTTCCGTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACT 93493 | | ||| || | | ||||||||| ||| ||||| || | ||||||||||| || Sbjct 28630 AGCGAGCCTCTGGCACCTGCACTTCGTTGCTAAAAT-TCATGGCTAGATTTTCATTCACG 28688 Query 93494 ATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCT 93553 || || || || ||||| ||||| | | |||||| || |||| ||| | || Sbjct 28689 ATGCCGTCACTAGCAGCAAAGAAAGCGAGCACATGCTTAATGAAATAACGCTCGTTGTCC 28748 Query 93554 TTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAAC 93613 | || || ||||||| ||||| | ||||||| ||| || | ||||| || Sbjct 28749 GTGAGGCTAGCCCAATCTTTCAGATCGTGCACCAGATCGAGTTCCTCAGCTGTCCAGAAA 28808 Query 93614 GATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA 93673 || ||||| ||||| |||||||| | ||| | || || | ||||| ||||| | ||| Sbjct 28809 GAAGCTTCAGCTTTCTTGTACATCTGCCACACTTCGTGCTCCTGAATGGGAAAGAGCACA 28868 Query 93674 AAACGATT 93681 || ||||| Sbjct 28869 AAGCGATT 28876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556845729954600