Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1775 132 4e-26 seq1422 131 1e-25 seq1301 111 1e-19 seq1110 91.5 1e-13 >seq1775 Length=332822 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || || || | || || || || | || || || ||||| || Sbjct 274769 AAAATGCAGATTTTCGTCAAGACCCTGACGGGCAAGACCATTACGCTGGACGTGGAGCCC 274828 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||| | | ||| || ||||||| |||||||| |||||||| || ||||||||||| Sbjct 274829 TCGGATAGCATTGACAATGTCAAACAGAAAATTCAGGACAAGGAAGGGATTCCACCCGAC 274888 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || ||||| ||||| ||| | || ||| ||| || | | || ||| Sbjct 274889 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGGACTTTGGCAGACTAC 274948 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| |||||||| || | || | || ||||| |||| || ||| Sbjct 274949 AATATTCAGAAAGAATCGACGCTGCACCTCGTGTTGCGTCTGCGTGGCGGT 274999 >seq1422 Length=277306 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||||| || ||||| ||| | || || || ||||| || | Sbjct 271323 ATGCAAATTTTTGTAAAGACTTTGACTGGTAAGACGATTACGCTGGACGTGGAGCCCTCG 271382 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | ||| || | || ||||| || || |||||||| || |||||||| ||||| Sbjct 271383 GATTCGATCGACAATGTAAAGCAAAAGATCCAGGACAAGGAAGGCATTCCACCTGATCAG 271442 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | ||||| || || | | || ||||| Sbjct 271443 CAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGTACTTTGGCTGACTACAAT 271502 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || | || | || ||||||||||| Sbjct 271503 ATTCAGAAGGAGTCTACGCTCCACCTGGTACTTCGTTTGCGCGGAGG 271549 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||| | || ||||| ||| ||||| | || |||||| | | Sbjct 271095 ATGCAAATTTTCGTCAAGACTCTGACTGGTAAGACGATCACTTTGGACGTGGAACCTTCG 271154 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || | | || ||||| || || |||||||| || |||||||| ||||| Sbjct 271155 GACTCGATCGATAACGTAAAGCAAAAGATCCAGGACAAGGAAGGAATTCCACCTGATCAG 271214 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| |||||||||||||| ||| | ||||| || || | | || ||||| Sbjct 271215 CAGCGTCTGATATTTGCCGGCAAGCAGCTCGAGGACGGTCGTACTTTGGCTGACTACAAT 271274 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || | || | || | || | || ||||||||||| Sbjct 271275 ATACAGAAGGAGTGTACGCTCCACCTGGTGCTTCGTTTGCGCGGAGG 271321 >seq1301 Length=515170 Score = 111 bits (122), Expect = 1e-19 Identities = 694/1105 (63%), Gaps = 43/1105 (4%) Strand=Plus/Plus Query 128782 TCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCTGTT 128841 || || ||||| || ||||| || | ||||| || ||||| || ||||| || || Sbjct 331450 TCAACCGTAAACTTGATAGCATCAACAGCCGGACGAGTACGCAAGTAATACATACCAGTC 331509 Query 128842 TTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGTTGA 128901 |||||||| |||||| || | || || | |||||| | |||| |||| Sbjct 331510 TTCAAACCAAGCTTCCAACCGTAAAAATGCATTGAAGTCAACTTCGAAAAGGTTGGTTCG 331569 Query 128902 CTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATA 128961 | ||| || || ||||||||||||||| || | || ||||| ||||||| Sbjct 331570 GCAATGTGAATGTTCAAACTTTGACTTTGATCAATGAAAGCACCACGATCAGCAGCCAAG 331629 Query 128962 CCAATCA--AATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTT 129019 |||| | | ||||| | |||||||| || || ||||| | || ||| | || Sbjct 331630 TCAATAATGACTTTTTGAGAA--ATTTCCCAAACTGTCTTGTACAAGTCCTTCAATTCTT 331687 Query 129020 TTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCT 129079 || || ||| || || || || ||||| || || ||| Sbjct 331688 GCGGGATGCTGGGAATCTTTTGTACTGAACCACCCGCAGCAATGATGCGATTCTTCATGG 331747 Query 129080 GTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGAA 129139 ||| || |||| || || ||||||| | ||||||||| || | | ||| | Sbjct 331748 ATTCATTCCACAATCCCAATTCAGTCAAATCCTTCATCAAGTATTGATTGACAATTTGGA 331807 Query 129140 AGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCAT 129199 | ||||| || ||||| || ||| |||||||||| ||||| |||||||| |||||| Sbjct 331808 ATTCACCAGCTAAAACACGACGAGTGTAAATGTTGGAAGTGAAAGGCTCAAAGCATTCAT 331867 Query 129200 TGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGTTTC 129259 ||| || | ||||||| || | || || |||||| ||| | | | || || | Sbjct 331868 TGTAACCAAGAATTTGAGAGGTAGAAGCAGTCGGCATGGGAGCAAGTAACAAGGAATTAC 331927 Query 129260 GCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACA--TCGATGTGGG 129317 | | ||| || | ||| | || || || ||| ||||||| ||| | || Sbjct 331928 GAACACCATGTTCAGAAATCTTAGCCTTCAAAGCTGACCAATCCCACAAGTCG--GAAGG 331985 Query 129318 TGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACT----GGAAAAGT 129373 || |||||||| ||| |||||||| | |||| || | || || || |||| Sbjct 331986 GGTCACATTCCACATGTCATATTGCAAAACACCCTTGCTCACAGGGCTACCCGGGTAAGT 332045 Query 129374 AGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAAT 129433 || | ||| || | | || |||||||| ||| |||||||| || ||| | | Sbjct 332046 TTGA-TAGTGT---CCTTCAATTTGAGCCAATTCACAAGAAGCTTCCAAGGCACCATAGT 332101 Query 129434 AAATTGTTTCGGCAATTTTGGTGTTCAACACTTTG----GCCTGGTCGCTTTCGTACGGC 129489 | || || || |||| | ||||| ||| || | || | || | ||| Sbjct 332102 AGATGGTCTCAAAGATTTGCTTATTCAA----TTGACGAGCGCGTTCACAATCAAATGGC 332157 Query 129490 ATACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGT 129549 || |||| || || | || || || ||||||| || | ||| ||||| ||||| Sbjct 332158 ATTCGCATCAGAATGAAAGCATCAGCTAATCCTTGAACTCCAATACCAATGGGACGATGA 332217 Query 129550 TTTCTATTGGATTTTTGTGCCGA--CAACAAGGGATAGTAGTTGATGTCTATAATTTTGT 129607 |||| || | ||| |||| || || || |||| ||| || || | Sbjct 332218 CGCATATTAGAACGACGAGCCTGTTCAACTGGG--TAATAATTGACGTCAATGATACGAT 332275 Query 129608 TTAAATTCTTGACCACAATTTTCGTTACGTATTTTAA--CATT----TCAAAATTGTACT 129661 | || |||||| |||| || | || | ||| || | || |||||| ||| || Sbjct 332276 TCAAGTTCTTGGTGACAACCTTGGCAACATGTTTCAATTCTTTGAAATCAAAAGTGTTCT 332335 Query 129662 CGCCTACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCAC 129721 ||| || ||||| | | | ||| || ||||||||||| || ||| Sbjct 332336 T------ATCCTTG---ACAAAGGCAGGCAAAGCAATAGAAGCCAAATTGCAAACAGCAA 332386 Query 129722 TTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGC 129781 | || | | ||| || |||||||| | |||||||| | ||| ||||| | Sbjct 332387 TCTCATCAGGAGCCGAGTATTCAACAATTTCAGTACACAAATTGGAACATTTGATGGTTC 332446 Query 129782 CCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGC 129841 |||| | | |||||| || || ||||||||||| ||||||| |||||| || || | Sbjct 332447 CCAAGTTTTGTTGATTGCTCTTGGAATTGCAAGCATCCTTGTACAGCATGTAAGGAGTAC 332506 Query 129842 CCGTTTCGACTTGCGTTTCGACAAT 129866 | ||||| ||||| | ||| | ||| Sbjct 332507 CAGTTTCAACTTGAGATTCCAAAAT 332531 >seq1110 Length=486086 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || || || || || || | || || || |||||| | | Sbjct 256103 ATGCAGATTTTTGTCAAGACGTTGACGGGCAAGACCATTACGCTGGACGTGGAACCGTCA 256162 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | | ||| || | || || ||||| || |||||||| || ||||| || || || Sbjct 256163 GACAGCATTGACAATGTAAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 256222 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| ||||| || | || ||| ||| | | | || |||||| Sbjct 256223 CAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTTCACTTGCGGACTACAAC 256282 Query 22399 ATTCAAAA 22406 |||||||| Sbjct 256283 ATTCAAAA 256290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419716925083225