Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq412 114 3e-20 seq1445 102 2e-16 seq1491 100 6e-16 seq1946 96.9 7e-15 seq633 93.3 9e-14 seq1890 86.0 1e-11 seq1320 86.0 1e-11 seq823 86.0 1e-11 >seq412 Length=287632 Score = 114 bits (126), Expect = 3e-20 Identities = 245/362 (68%), Gaps = 7/362 (2%) Strand=Plus/Plus Query 218650 GAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGT 218709 || || || || || ||||| | ||||| || || || |||| |||||||||||| Sbjct 72513 GAGATCAAAGTGGCACAGTTGGCGGGTTACGTCTCTGAGCACTCTGCTTACCATCACGGT 72572 Query 218710 GAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAAC 218769 ||||||||| | ||||| ||||| ||||||||||||| ||| || || ||||| Sbjct 72573 GAGCAGAGTTTACAGGGATGTATTGTCAATATGGCACAGGACTTTGTTGGTAGCAACAAT 72632 Query 218770 ATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGT 218829 || | | ||| ||| | ||| || |||||| ||||| || |||| || ||||| Sbjct 72633 ATCCATCTTCTGTCCCCGATCGGCCAATTTGGTACTCGTTTAATGGGAGGCAAGGACGCG 72692 Query 218830 GCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATC-- 218887 || |||| | || || || || || || || |||| ||| | | | | ||| Sbjct 72693 GCCAGTGCCCGTTACATTTTCACTAACTTAGAGCAGCTGACACGCGTGATTTACGATCCT 72752 Query 218888 -AGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAG 218946 || | | ||| || | | |||||||| | || || ||| |||||||| ||||| Sbjct 72753 TCGGACAACGAT-TGTT--TGAAGTATCTGGTTGAGGACGGTCAATCGATTGAACCCGAA 72809 Query 218947 TGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGG 219006 ||||| | || |||||| | |||| || || ||| | | ||||| || || ||| Sbjct 72810 TGGTACATTCCAATTATTCCCATGGTGCTTGTCAACGGTAGCGACGGTATTGGAAC-GGG 72868 Query 219007 TT 219008 || Sbjct 72869 TT 72870 >seq1445 Length=178852 Score = 102 bits (112), Expect = 2e-16 Identities = 184/269 (68%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 218566 CGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCC 218625 ||||| || || ||| | || ||||| ||||||| || ||||| ||| | |||||| Sbjct 44357 CGTTCAATCCCGAGCATTGTTGATGGTTTCAAGCCGGGTCATCGTAAAATCATGTTTGCC 44416 Query 218626 GCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCC 218685 |||||||| || | ||||| ||| | ||||| || | ||||| || | Sbjct 44417 TGCTTCAAGCGTAAATTAAGAAGTGAAATCAAGATTGCTCAATTAGCCGGTTACGTTGCA 44476 Query 218686 GAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCA 218745 ||| |||| || |||||||||||||| || || ||||| | ||| |||| Sbjct 44477 GAACACTCTGCTTATCATCACGGTGAGCAAAGCTTGTGTTCCACCATTATTGGCTTGGCT 44536 Query 218746 CAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCT 218805 || ||| ||| || || || ||||| ||||| || || |||||||| |||||| || Sbjct 44537 CAAAACTTTGTTGGAAGCAATAACATTAACTTACTTGAACCGAACGGTCAATTTGGTACT 44596 Query 218806 CGTCTATTGGGTGGAAAGGATAGTGCTTC 218834 ||| | ||||| || ||| |||||| Sbjct 44597 CGTTTGCAAGGTGGTAAAGATGCTGCTTC 44625 >seq1491 Length=35835 Score = 100 bits (110), Expect = 6e-16 Identities = 133/181 (73%), Gaps = 9/181 (5%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGA----GACCCA 280234 || ||||| ||||| |||||||| || || ||||| | ||||| || || || || Sbjct 25871 GGTCCCAACGGTGCTGGTAAGTCGACGCTTATCAAGATGCTGACGGGTGAAGTAGAGCC- 25813 Query 280235 GGCCACTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 | ||| || |||| | | ||||| || || |||||| | || || || ||||||| Sbjct 25812 GACCAGTG---GGTCAGGTGTGGAAACACCCTTCCATGCGTTTTGCCTATGTGGCTCAGC 25756 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGC 280353 | ||||| |||||||| ||| ||||| ||| |||| | ||||| ||||||||||||| Sbjct 25755 ATGCTTTTCACCACATTGAGTCGCACCTCGACGAGACTGCGAACCAGTACATTCAGTGGC 25696 Query 280354 G 280354 | Sbjct 25695 G 25695 >seq1946 Length=427495 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 284271 AGCCCGGATAGCTCAGTCGGTAGAGCGTGAGACTTTTAATCTTAAGGTCGTGGGTTCGAG 284212 Query 142563 CCCCACATCGGGC 142575 |||||| |||||| Sbjct 284211 CCCCACTTCGGGC 284199 >seq633 Length=73390 Score = 93.3 bits (102), Expect = 9e-14 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| |||||||||||||||||||| |||||| |||||| ||||||||||||||||||| Sbjct 29606 CCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCCTAATCTTGTGGTCGTGGGTTCGAGCC 29665 Query 142565 CCAC 142568 |||| Sbjct 29666 CCAC 29669 >seq1890 Length=541308 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||| | ||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 191747 GCCCTGCTAGCTCAGTCGGTAGAGCGTGAGACTCTTAATCTCAATGTCGTGGGTTCGAGC 191806 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 191807 CCCACGTGGGGC 191818 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||| | ||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 490499 GCCCTGCTAGCTCAGTCGGTAGAGCGTGAGACTCTTAATCTCAATGTCGTGGGTTCGAGC 490440 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 490439 CCCACGTGGGGC 490428 >seq1320 Length=246013 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||| | ||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 132616 GCCCTGCTAGCTCAGTCGGTAGAGCGTGAGACTCTTAATCTCAATGTCGTGGGTTCGAGC 132675 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 132676 CCCACGTGGGGC 132687 >seq823 Length=253568 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||| | ||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 17229 GCCCTGCTAGCTCAGTCGGTAGAGCGTGAGACTCTTAATCTCAATGTCGTGGGTTCGAGC 17170 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 17169 CCCACGTGGGGC 17158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027808288770765