Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq689 260 3e-64 seq1355 143 5e-29 seq1775 136 7e-27 seq1422 127 4e-24 seq1301 123 5e-23 seq1491 118 2e-21 seq1110 100 5e-16 seq633 89.7 9e-13 seq1946 86.0 1e-11 >seq689 Length=1406 Score = 260 bits (288), Expect = 3e-64 Identities = 391/550 (71%), Gaps = 4/550 (1%) Strand=Plus/Minus Query 268246 CTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGC 268305 ||| ||||| |||||| | |||||| || || || |||||||| |||||||| || Sbjct 1300 CTGCAGCATCAGCCACATGCCGCGGACATATTCGCGGGCGTGGCCCCAGTCGCGCTTGGC 1241 Query 268306 GTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCA-CGCGTGCAAGACCGC 268364 ||| | || ||||| | || | ||| ||| |||| | ||| || | ||| Sbjct 1240 GTCGAGATTGCCGAGATAGAGCTTGTCCTGGAAGCCCTGCTTGATCGCC-GCGACGGCGC 1182 Query 268365 GAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGA 268424 | ||||| || ||||| ||||| |||||||| || || ||||||||||||||||| |||| Sbjct 1181 GGGTGATCTTGCGGGTGACGAAGGTCTCGCCCCGCAGCGGGCTCTCGTGGTTGAACAGGA 1122 Query 268425 TGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAA 268484 ||||||||| ||| |||||||| ||||| |||||||| || || ||||||| || Sbjct 1121 TGCCGTTGCTGGCGTGGATGCCATAGGCCTCGCGGTAGTTGACCACGATCCAGTAGCCAT 1062 Query 268485 ACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGA 268544 | | ||| || | ||||| || || |||| |||||| ||| | | || || | Sbjct 1061 AGAGCTTGGCGGCGGCGTAGGGGCTGCGCGGATAGAAGGGGGTCTTCTCGCTCTGCGGCA 1002 Query 268545 TTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTT 268604 ||| |||| |||| | || || |||||||| || ||||||||| || | || | Sbjct 1001 CTTCCTGGACCAGGCCATACAGTTCCGAGGTCGAGGCCTGGTAGAACCGGGTCTTCTTCT 942 Query 268605 CGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCG 268664 | || || ||| ||||| || || |||| || || || || || | || ||| | Sbjct 941 CCAGGCCCAGGATGCGGATGGCTTCCAGCAGGCGCAGGGTGCCGGTGGCGTCGGCGTT-G 883 Query 268665 CTG-TATACTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAA 268723 ||| | || || ||| ||||||| |||||||| ||||||||||| ||||||| || Sbjct 882 CTGGTGTATTCAGGCGTCTCGAAGCTGACCTGGACGTGGCTCTGGGCCGCCAGGTTGTAG 823 Query 268724 ACCTCATCCGGTTTGACCTGCTGCACGATCTTCACGAGGTTCGTTGAGTCGGTGAGGTCT 268783 | ||| ||||| | | ||||||||||||| | |||||||| |||||| | ||| Sbjct 822 ATCTCGTCCGGCTGGGTCTGCTGCACGATCCGGATCAGGTTCGTGCTGTCGGTCATGTCG 763 Query 268784 CCGTAGTGCA 268793 ||||| |||| Sbjct 762 CCGTAATGCA 753 >seq1355 Length=184863 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || ||||| || | ||| || || ||||| || |||||||| || ||| Sbjct 90656 CCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 90715 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || |||||||| || || || || || | ||| ||||| |||||| Sbjct 90716 AGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGA 90775 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| |||||||| ||| ||| ||||| | ||| | | || || Sbjct 90776 ATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACG 90835 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || |||||||| | ||||||||||| |||||||| Sbjct 90836 TCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 90882 Score = 143 bits (158), Expect = 5e-29 Identities = 171/230 (74%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG-- 68292 ||||| || || ||||| || | ||| || || ||||| || |||||||| || ||| Sbjct 91113 CCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 91172 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | ||| | | || || || |||||||| || || || || || | ||| ||||| |||| Sbjct 91173 AAAGT-TACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTG 91231 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||||||||| |||||||| ||| ||| ||||| | ||| | || |||| Sbjct 91232 GAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGCTCTA 91291 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || | ||||| || |||||||| || ||||| || || ||||||||| Sbjct 91292 CGTCGAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCATT 91341 Score = 138 bits (152), Expect = 2e-27 Identities = 168/228 (74%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTT-TGGATGTTATAATCGGA 68293 ||||| || || ||||| || | ||| || || ||||| ||| |||||||| || ||| Sbjct 90884 CCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTCGCT 90943 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 | || | || || || |||||||| || || || || || | ||| ||||| ||||| Sbjct 90944 CAAAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGG 91003 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| ||||||||||| |||||||| ||| ||| ||||| | ||| | | || || Sbjct 91004 AATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAAC 91063 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || |||||||| | ||||||||||| |||||||| Sbjct 91064 GTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 91111 Score = 123 bits (136), Expect = 5e-23 Identities = 170/234 (73%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 68230 AATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAAT 68289 ||||||| || || |||||||| || | ||| || || |||||||| |||||||| || | Sbjct 90423 AATTTCCACCACGCAGGCGCAACACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGT 90482 Query 68290 CGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGG 68349 || || || | || || || |||||||| || || || || || | ||| ||||| | Sbjct 90483 CGCTCAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAG 90542 Query 68350 GTGGAATGCCTTCCTTGTCTTGAA--TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 ||||||| ||||||||||| | || |||| ||| || ||||| | ||| | | Sbjct 90543 GTGGAATTCCTTCCTTGTCCTAAATTTCTTCTGCTTCAC-TTGTCGATCGAGTCGGAAG- 90600 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | || || || |||||||| | |||||||| || |||||||| Sbjct 90601 CTCAACGTCAAGAGTAATAGTCTTTCCCGTCAAAGTCTTGACAAAAATCTGCAT 90654 >seq1775 Length=332822 Score = 136 bits (150), Expect = 7e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| || | ||| ||||| || ||||| || || || || || | Sbjct 274998 CCGCCACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCTGCC 274939 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | |||| |||||||| | |||||| || || || || || | || |||||||||||| Sbjct 274938 AAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGA 274879 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| ||||| || ||||| || ||| | || | | || || Sbjct 274878 ATCCCTTCCTTGTCCTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACG 274819 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| || ||||| || ||||| |||||||||||||| ||||||||| Sbjct 274818 TCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCATT 274771 >seq1422 Length=277306 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| | || | |||| ||| ||||| |||| || || || || || || | Sbjct 271321 CCTCCGCGCAAACGAAGCACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAGCC 271262 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| ||||| ||||| || | || || || |||||| Sbjct 271261 AAAGTACGACCGTCCTCGAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTGGA 271202 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || |||||| ||| ||| ||||| | ||| | | ||| || Sbjct 271201 ATTCCTTCCTTGTCCTGGATCTTTTGCTTTACGTTATCGATCGAGTCCGAAGGTTCCACG 271142 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| ||||| || || || || || ||||||||||| || |||||| Sbjct 271141 TCCAAAGTGATCGTCTTACCAGTCAGAGTCTTGACGAAAATTTGCATT 271094 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| | || | ||||| ||| ||||| ||||| || || || || || || | Sbjct 271549 CCTCCGCGCAAACGAAGTACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAGCC 271490 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| || || || || || | || || || |||||| Sbjct 271489 AAAGTACGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGGA 271430 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || |||||| ||| || ||||| | || | | || || Sbjct 271429 ATGCCTTCCTTGTCCTGGATCTTTTGCTTTACATTGTCGATCGAATCCGAGGGCTCCACG 271370 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || || || || || || | ||||| || || || ||||| Sbjct 271369 TCCAGCGTAATCGTCTTACCAGTCAAAGTCTTTACAAAAATTTGCAT 271323 >seq1301 Length=515170 Score = 123 bits (136), Expect = 5e-23 Identities = 247/366 (67%), Gaps = 0/366 (0%) Strand=Plus/Minus Query 268364 CGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGG 268423 ||| | || |||| ||| || || || ||||| ||||||| || || ||||| ||| Sbjct 132221 CGACTAATCTTTCTGGTAACAAAAGTGCGACCACGACGAGGGCTTTCATGATTGAAAAGG 132162 Query 268424 ATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCA 268483 || || || || |||||||| || || || || ||||| || | || |||| || | Sbjct 132161 ATTCCATTACAAGCGAACATTCCGTAAGCTTCTCGGTAATTGATTACAATCCAATAAGAG 132102 Query 268484 AACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGG 268543 |||| || ||||| |||| ||||||||||||| |||||| || || ||||||| Sbjct 132101 TACATTTTGGCAACCCCGTAAGGAGAACGTGGATAGAAGGGAGTAGTTTCACTTTGAGGC 132042 Query 268544 ATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTT 268603 |||| ||||| || | | || || || |||||||| || || | ||| Sbjct 132041 GTTTCAACTACTTTACCGTACAATTCAGAAGTGGATGCTTGATAAAAACGAACTTCCTTT 131982 Query 268604 TCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCC 268663 || | || || | ||| || || || ||||| || ||||| | |||| || || Sbjct 131981 TCCATTCCACAAGCCCTGATGGCATCAAGTAAACGCAGCGTTCCTAAAGCATCAACTTCT 131922 Query 268664 GCTGTATACTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAA 268723 | |||||||| | ||| || || || | ||| || || || || |||| || ||| Sbjct 131921 CCAGTATACTCGGCCATTTCAAAACTAACTTTGACGTGACTTTGTGCTCCCAAATTGTAA 131862 Query 268724 ACCTCA 268729 || ||| Sbjct 131861 ACTTCA 131856 >seq1491 Length=35835 Score = 118 bits (130), Expect = 2e-21 Identities = 142/192 (74%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||| ||||||||||| | ||| ||| ||||| |||||| ||||| |||||| Sbjct 25695 CGCCACTGAATGTACTGGTTCGCAGTCTCGTCGAGGTGCGACTCAATGTGGTGAAAAGCA 25754 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099 ||||| || || || || | |||||| || || ||||||| | || || | ||||| Sbjct 25755 TGCTGAGCCACATAGGCAAAACGCATGGAAGGGTGTTTCCACACCTGACCCACTGGTCGG 25814 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 | | | || || || || | |||||| ||||| | ||| || ||||| ||||| || | Sbjct 25815 CTCTACTTCACCCGTCAGCATCTTGATAAGCGTCGACTTACCAGCACCGTTGGGACCGAG 25874 Query 225160 CACGCCAATCCG 225171 |||| |||| || Sbjct 25875 CACGGCAATACG 25886 >seq1110 Length=486086 Score = 100 bits (110), Expect = 5e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||| ||||| || || | |||| | |||||||| | ||||| || || || || Sbjct 256290 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 256231 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | || ||||| || ||||||||||||||||| || || || ||| || || Sbjct 256230 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGTCA 256171 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 ||| |||||| | ||| || |||| || ||||| || ||||| | |||||||| || Sbjct 256170 ATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAAAA 256111 Query 68454 ATCTGCAT 68461 |||||||| Sbjct 256110 ATCTGCAT 256103 >seq633 Length=73390 Score = 89.7 bits (98), Expect = 9e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 84457 CCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 84516 |||| |||||||||||| |||||||||| ||| ||| |||||||||||||||||||||| Sbjct 29606 CCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCCTAATCTTGTGGTCGTGGGTTCGAGCC 29665 Query 84517 CCAC 84520 |||| Sbjct 29666 CCAC 29669 >seq1946 Length=427495 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| |||||| || || |||| ||| |||||||||||||||| Sbjct 284270 GCCCGGATAGCTCAGTCGGTAGAGCGTGAGACTTTTAATCTTAAGGTCGTGGGTTCGAGC 284211 Query 84516 CCCACATCGGGC 84527 ||||| |||||| Sbjct 284210 CCCACTTCGGGC 284199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921597458593800