Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1422 91.5 1e-13 seq1775 86.0 4e-12 >seq1422 Length=277306 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || || || || || ||||| |||| ||| || | Sbjct 271323 ATGCAAATTTTTGTAAAGACTTTGACTGGTAAGACGATTACGCTGGACGTGGAGCCCTCG 271382 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | || | |||||||| || || || || || | ||||| | Sbjct 271383 GATTCGATCGACAATGTAAAGCAAAAGATCCAGGACAAGGAAGGCATTCCACCTG---AT 271439 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||| | || |||||||||||||| || || || || ||| |||| || ||| Sbjct 271440 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGTACTTTGGCTGACTAC 271499 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| ||||| || || ||||| | ||||| || ||||| Sbjct 271500 AATATTCAGAAGGAGTCTACGCTCCACCTGGTACTTCGTTTGCGCGGAGG 271549 >seq1775 Length=332822 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 |||||||| || || | || || | |||||||| |||||||| |||| ||| || Sbjct 274769 AAAATGCAGATTTTCGTCAAGACCCTGACGGGCAAGACCATTACGCTGGACGTGGAGCCC 274828 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || | | | | || | || || |||||| || || || || | || || Sbjct 274829 TCGGATAGCATTGACAATGTCAAACAGAAAATTCAGGACAAGGAAGGGATTCCACCCGAC 274888 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||| | || |||||||||||||| || || |||||| ||| |||| || ||| Sbjct 274889 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGGACTTTGGCAGACTAC 274948 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| ||||| || || || | || || ||| | || || || Sbjct 274949 AATATTCAGAAAGAATCGACGCTGCACCTCGTGTTGCGTCTGCGTGGCGG 274998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358115350541410