Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1775 132 4e-26 seq1110 120 3e-22 seq1422 116 3e-21 seq1355 98.7 8e-16 >seq1775 Length=332822 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || | ||| || | || | ||| |||||||| ||||| ||||| || Sbjct 274999 ACCGCCACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCTGC 274940 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||| || |||||| || || || ||||| |||| |||||||| ||||| || || Sbjct 274939 CAAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGG 274880 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||| || ||||| | | |||| | | || | || || || Sbjct 274879 AATCCCTTCCTTGTCCTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCAC 274820 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || | || ||||| ||||| || || || ||||||||||| Sbjct 274819 GTCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 274772 >seq1110 Length=486086 Score = 120 bits (132), Expect = 3e-22 Identities = 145/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 114195 TTTTGAATGTTGTAATCGCTCATAGT--ACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 |||||||||||||| || | || ||| ||| |||||||||||| || ||||| ||| Sbjct 256290 TTTTGAATGTTGTAGTC-CGCA-AGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 256233 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTT 114312 | | |||||| ||||| || ||||||||||| ||||| || || || |||| | | Sbjct 256232 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGT 256173 Query 114313 CAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 ||| | |||| | | ||| ||||||| || | || ||||| |||| || || |||| Sbjct 256172 CAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAA 256113 Query 114373 AAATCTGCATGGCT 114386 ||||||||||| || Sbjct 256112 AAATCTGCATGACT 256099 >seq1422 Length=277306 Score = 116 bits (128), Expect = 3e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 |||||| || || ||||| ||||| || || ||||||| || || || || || || Sbjct 271520 CGTAGACTCCTTCTGAATATTGTAGTCAGCCAAAGTACGACCGTCCTCGAGCTGCTTGCC 271461 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| |||| |||||||| || || || ||||||||||| ||||| |||||||| || Sbjct 271460 AGCAAAGATCAGACGCTGCTGATCAGGTGGAATGCCTTCCTTGTCCTGGATCTTTTGCTT 271401 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 || | || | | || | || || ||||||| || | ||| || || |||| ||| Sbjct 271400 TACATTGTCGATCGAATCCGAGGGCTCCACGTCCAGCGTAATCGTCTTACCAGTCAAAGT 271341 Query 114365 TTTTACAAAAATCTGCATGGCT 114386 ||||||||||| |||||| || Sbjct 271340 CTTTACAAAAATTTGCATGCCT 271319 >seq1355 Length=184863 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||| || | || | || || || || || |||||||| ||| Sbjct 90653 ATGCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 90712 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| |||||| || || | || || ||||| | || ||||| || ||||| || Sbjct 90713 CTCAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGT 90772 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || || | | || | | ||||| | || Sbjct 90773 GGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCA 90832 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 ||||| | || | || || || |||| ||| || || |||||||||||| || Sbjct 90833 ACGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATGCCT 90886 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/239 (70%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209 ||| | || ||||| || | ||| || | || | || || ||||| || |||||||| Sbjct 90422 CAATTTCCACCACGCAGGCGCAACACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAG 90481 Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269 ||||||| |||||| || || | || || ||||| | || ||||| || ||||| Sbjct 90482 TCGCTCAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCA 90541 Query 114270 GGAGGAATGCCTTCTTTGTCGGCAAT--CTTTTGTTTTAGCTGTTCAACGGTGTCGGTGG 114327 || ||||| ||||| ||||| ||| ||| || || | ||| | || ||||| | Sbjct 90542 GGTGGAATTCCTTCCTTGTCCTAAATTTCTTCTGCTTCACTTGTCGATCGA-GTCGGAAG 90600 Query 114328 ATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 | | ||||| | || | || || || |||| ||| || ||||||||||||||| || Sbjct 90601 CT-CAACGTCAAGAGTAATAGTCTTTCCCGTCAAAGTCTTGACAAAAATCTGCATGCCT 90658 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTT-TGAATGTTGTAATC 114211 || || ||||| || | ||| || | || | || || || ||| || |||||||| || Sbjct 90881 ATGCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTC 90940 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||||| |||||| || || | || || ||||| | || ||||| || ||||| || Sbjct 90941 GCTCAAAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGG 91000 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||| ||||| |||||| || || | | || | | ||||| | || Sbjct 91001 TGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTC 91060 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 ||||| | || | || || || |||| ||| || || |||||||||||| || Sbjct 91061 AACGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATGCCT 91115 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||| || | || | || || || || || |||||||| ||| Sbjct 91110 ATGCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 91169 Query 114213 CTCATAGT-ACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 |||| ||| ||| || || | || || ||||| | || ||||| || ||||| || Sbjct 91170 CTCAAAGTTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGG 91229 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||| ||||| |||||| || || | | || | | ||| | | || Sbjct 91230 TGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGCTC 91289 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| | || | || || || ||||| || ||||||||||||||||| Sbjct 91290 TACGTCGAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCAT 91340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420123314359980