Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1422 98.7 8e-16 >seq1422 Length=277306 Score = 98.7 bits (108), Expect = 8e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || |||||||| || ||||| | ||||||||| || ||||| || ||| Sbjct 271321 CCTCCGCGCAAACGAAGCACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAGCC 271262 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| || | |||||||||||||||||||| ||||||||||| || Sbjct 271261 AAAGTACGACCGTCCTCGAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTGGA 271202 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | | || |||||| || |||||||| Sbjct 271201 ATTCCTTCCTTGTCCTGGATCTTTTGCTT 271173 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || || ||||| || ||||| |||||||||||| ||||| || ||| Sbjct 271549 CCTCCGCGCAAACGAAGTACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAGCC 271490 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| || | |||||||| ||||| ||||| ||||||||||| || Sbjct 271489 AAAGTACGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGGA 271430 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || || |||||| || |||||||| Sbjct 271429 ATGCCTTCCTTGTCCTGGATCTTTTGCTT 271401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397051923136330