Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1422 132 1e-25 seq1775 113 1e-19 seq1355 111 4e-19 seq1110 100 7e-16 >seq1422 Length=277306 Score = 132 bits (146), Expect = 1e-25 Identities = 172/234 (74%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| | | ||| || || || | ||| | || || || ||||| |||| Sbjct 271325 CATG-CCTCCGCGCAAACGAAGCACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGT 271267 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || | || || ||||| || | || || || || || ||||||||||| ||| | Sbjct 271266 CAGCCAAAGTACGACCGTCCTCGAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAG 271207 Query 288362 CTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| |||||||| || |||||||| ||| ||||| ||||| || || || || | | Sbjct 271206 GTGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTT-ACGTTATCGATCGAGTCCGAAGGT 271148 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || | ||||||||||| || ||||||||||||||||| || |||||| Sbjct 271147 TCCACGTCCAAAGTGATCGTCTTACCAGTCAGAGTCTTGACGAAAATTTGCATT 271094 Score = 116 bits (128), Expect = 9e-21 Identities = 168/233 (72%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| | | |||||| || || | ||| || || || ||||| |||| Sbjct 271553 CATG-CCTCCGCGCAAACGAAGTACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGT 271495 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || | || || ||||| || | || || || || |||||||||||||| ||| | Sbjct 271494 CAGCCAAAGTACGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAG 271435 Query 288362 CTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || ||||| || |||||||| ||| ||||| || || || || ||||| | Sbjct 271434 GTGGAATGCCTTCCTTGTCCTGGATCTTTTGCTTT-ACATTGTCGATCGAATCCGAGGGC 271376 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| |||||||| || |||| |||||| || || || ||||| Sbjct 271375 TCCACGTCCAGCGTAATCGTCTTACCAGTCAAAGTCTTTACAAAAATTTGCAT 271323 >seq1775 Length=332822 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 ||||| || | ||| |||||| || ||||| ||||| || | || || || ||||| Sbjct 274980 ACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCTGCCAAAGTCCGGCCATCTTCG 274921 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 | || || || || |||||||||||||| || ||| || ||||| || ||||| Sbjct 274920 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTGTCCTGA 274861 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 |||||| ||| || || || || ||| | || || || ||||| || ||||| Sbjct 274860 ATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAATGGTCTTG 274801 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||||||||| ||||||||| Sbjct 274800 CCCGTCAGGGTCTTGACGAAAATCTGCATT 274771 >seq1355 Length=184863 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| || || || ||||| || || || || || || || Sbjct 90692 TCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAA 90751 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| || || | ||| |||||||| || ||||| || ||| |||||||| Sbjct 90752 ATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTG 90811 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || ||| | || || || || ||||| ||||| || |||| |||||||||| Sbjct 90812 TCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACG 90871 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 90872 AAAATCTGCAT 90882 Score = 109 bits (120), Expect = 1e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| ||||| || |||||| | || || ||||| || || || || || || || | Sbjct 90922 CTTTCTGGATGTTGTAGTCGCTCAAAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAA 90981 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 | ||||| || || | ||| |||||||| || ||||| || ||| |||||||| | Sbjct 90982 TTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGT 91041 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || || ||| | || || || || ||||| ||||| || |||| ||||||||||| Sbjct 91042 CGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGA 91101 Query 288464 ATATCTGCAT 288473 | |||||||| Sbjct 91102 AAATCTGCAT 91111 >seq1110 Length=486086 Score = 100 bits (110), Expect = 7e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 ||||| || || ||||| || || | || || ||||| | ||| || || || |||||| Sbjct 256290 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 256231 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC-GCTTTCACGTTTTC 288404 | |||||| || | || || ||||| || |||||||||||| ||||| || || || Sbjct 256230 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTT-ACATTGTC 256172 Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || || || ||| || || ||||| || ||||| || |||| |||||||| || Sbjct 256171 AATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAAA 256112 Query 288465 TATCTGCAT 288473 |||||||| Sbjct 256111 AATCTGCAT 256103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179621677492870