Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1435 150 4e-31 seq1491 93.3 9e-14 >seq1435 Length=478137 Score = 150 bits (166), Expect = 4e-31 Identities = 473/719 (66%), Gaps = 23/719 (3%) Strand=Plus/Plus Query 306462 TTCTACAATTGCTCCGATGATATCTTGAGGCACCCCCTCGAAATTAGCCAGCAATTGCTT 306521 |||||||||||| | |||||| | | ||| || | | || |||| | |||||| Sbjct 84439 TTCTACAATTGCGCTGATGATGTTGTTAGGGACGTTGTTATAGTTGGCCAAGAGTTGCTT 84498 Query 306522 CGTATCCTTTGGAAAGCAATAAGCTCCGTAACCGAACGATGGATTCGAATATCCCTGGCC 306581 |||||||| || | ||||||| | || ||||||| || || || || | ||| Sbjct 84499 GGTATCCTTGGGCAGGCAATAACCACCAAAACCGAATGAGGGGTTGTTGTAGTAATTGCC 84558 Query 306582 AATTCGAGGTTCTAGAGTAACACCATCGATGATTTCTTTCGC-ATTCATATCATGAGACA 306640 ||| || || || | || || ||||| || || || | || || || Sbjct 84559 AATGCGGGGATCCATGCAGACGCCTTCGATAAT--CTGACGGGAGTC-TAGGCCCAGGG- 84614 Query 306641 TTGC-GAAT--GTATCTAGTTCGTTGAAGTATGCAACTCGCATTGCAAGATACGTGTTAG 306697 |||| | || || || |||||||||||||| || || ||||| || ||||| |||| | Sbjct 84615 TTGCAGCATAGGTGTCGAGTTCGTTGAAGTAGGCGACACGCATGGCGAGATAGCTGTTGG 84674 Query 306698 AGAATAGTTTGACGGCCTCGGCTTCGCGAGTTCCCATCGTCAGAATAGGGGCAAGTGGAG 306757 |||| ||||| ||||| || ||||| || | | | || | || | || | || | Sbjct 84675 AGAAGAGTTTAACGGCTTCTGCTTCAGTAGGTTCGGT-GT-ATAAAACGGCAATGTTTTG 84732 Query 306758 TTT--TAGAACCTTCAACGAGAAGGTTTGCGAACTTAAGTGCACTAGGAGAATCATCTCC 306815 || ||| ||||| | |||| || || || || | | ||| ||||| Sbjct 84733 CTTGATAGCGCCTTCTTGCAAAAGGGCGGCAAATTTTTCGGCGCGCGCAGATCTTTCTCC 84792 Query 306816 TACGATGATACGGGATGGATAGAGATTATCATACAAGGCTCTACCTTCACGCAGAAATTC 306875 || |||||| |||||||||| ||| || ||||||| |||| ||||||| ||||||||||| Sbjct 84793 TATGATGATGCGGGATGGATGGAGGTTGTCATACAGGGCTTTACCTTCTCGCAGAAATTC 84852 Query 306876 TGGGGAGAAAATGATATTTTTGTAGTCGAATTGTTCACGCATCTTATCTAC---GAATCC 306932 || ||||| |||||||| | || || || | | ||| | | | | || Sbjct 84853 AGGAGAGAAGATGATATTGGGGCTGTTGA---GTGTAGTTTTGATATATGCGGTGTAGCC 84909 Query 306933 GATGGGGATGGTGGATTTAATCACGATAGTTGGCCGGGTCTGTGTATTTTTG-ATCACGT 306991 | ||| | ||||||||||||||| ||||| || || || || | ||| ||||||| Sbjct 84910 AACGGGAACGGTGGATTTAATCACCATAGT----CGCGTTTGGGTTGTATTGCATCACGT 84965 Query 306992 CTCCGATGACATTTTCCACAGATTTCGTGTTAAAATATCTGGTAACAACGTCATAGTCAG 307051 || ||| || ||| | || | || ||||| || | || || ||| ||||| | Sbjct 84966 CTTTGATAACGGCTTCAATGGAGCTGGTATTAAAGTAGTTAGTCTCAGGGTCGTAGTCGG 85025 Query 307052 TCGGGGTTGCGATGATGACAAATTCGGTGTTTTCGTACGCAATAAACTTGTCAGTCGTCG 307111 | ||||| || || | ||||| || | |||||| || ||||| ||| | Sbjct 85026 TGGGGGTAGCAATCACCACAAACTCAGCACCTTCGTAGGCTTCTTTTTTGTCCAGCGTTG 85085 Query 307112 CGGTAAGGTTCAACTCTTTCGTCTCGAGAAACTCTTCGATCTCCTTGTCCTCGATGGGA 307170 || || ||| | |||| || | | ||||||||||||| ||||| || || ||| Sbjct 85086 CGCGAAAGTTAAGTGCTTTTGTTGCCAAGTACTCTTCGATCTCTTTGTCTTCAATTGGA 85144 >seq1491 Length=35835 Score = 93.3 bits (102), Expect = 9e-14 Identities = 140/197 (71%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||||||||||||||| || ||||||| || || |||||||| | ||| ||| || Sbjct 25670 CTCTTTGTCTTCACCAGACTGGAAACGCCACTGAATGTACTGGTTCGCAGTCTCGTCGAG 25729 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| |||||||| ||||||||||| ||||| || |||| |||||| || || Sbjct 25730 GTGCGACTCAATGTGGTGAAAAGCATGCTGAGCCACATAGGCAAAACGCATGGAAGGGTG 25789 Query 333434 CTTCCAAACACT--TCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTG 333491 ||||| || || || |||| | || | || ||||| |||| ||| || || || Sbjct 25790 TTTCCACAC-CTGACCCACTGGTCGGCTCTACTTCACCCGTCAGCATCTTGATAAGCGTC 25848 Query 333492 CTTTTTCCCGCACCATT 333508 || || ||||| || Sbjct 25849 GACTTACCAGCACCGTT 25865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102849407142750