Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1301 199 5e-46 seq1526 111 2e-19 seq1445 87.8 2e-12 >seq1301 Length=515170 Score = 199 bits (220), Expect = 5e-46 Identities = 516/780 (66%), Gaps = 16/780 (2%) Strand=Plus/Plus Query 114255 AATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 114314 ||||||| | | ||| || ||| || |||| || | ||||| || || | |||| Sbjct 332147 AATCAAATGGCATTCGCATCAGAATGAAAGCATCAGCTAATCCTTGAACTCCAATACCAA 332206 Query 114315 TTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGA 114374 | || ||||| | ||||||||| ||||| || || || ||| |||| || | Sbjct 332207 TGGGACGATGACGCATATTAGAACGACGAGCCTGTTCAACTGGGTAATAATTGACGTCAA 332266 Query 114375 TAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA----TTTCATGAAGCTTTTCGTAA 114430 | | | ||| | || |||||||||||||| | | ||||| | |||| | || Sbjct 332267 TGATACGATTCAAGTTCTTGGTGACAACCTTGGCAACATGTTTCA--ATTCTTT--GAAA 332322 Query 114431 TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACAC 114490 |||||| || ||| || |||||| | ||| | || || || |||| ||| || Sbjct 332323 TCAAAAGTGT---TCTTATCCTTGACAAAGGCAGGCAAAGCAATAGAAGCCAAATTGCAA 332379 Query 114491 ACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTA 114550 |||| ||||||| | | | ||| || | |||||| ||||||||||| |||| || Sbjct 332380 ACAGCAATCTCATCAGGAGCCGAGTATTCAACAATTTCAGTACACAAATTGGAACATTTG 332439 Query 114551 ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTAT 114610 ||||| |||||||| | |||||| ||| | || || ||||||||||| |||||||| Sbjct 332440 ATGGTTCCCAAGTTTTGTTGATTGCTCTTGGAATTGCAAGCATCCTTGTACAGCATGTAA 332499 Query 114611 GGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCACA 114670 || || || || || ||| || | | |||||| ||||| | | || | ||| Sbjct 332500 GGAGTACCAGTTTCAACTTGAGATTCCAAAATAGCATTCCAAAGCTTTTGAGCACGAACA 332559 Query 114671 GTGGCGTTG-GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACC 114729 || | || | || || | |||||||| ||| || |||||||| || |||| Sbjct 332560 -ACACGACGAGCATGACCTTCATTTTCGTACTTCTCGTAAAGAGCTTCAAATTCAGCACC 332618 Query 114730 CACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTC 114789 | | || || | || || | || |||||||||||| ||||| | | | | Sbjct 332619 CCAAACATCAGACAAACCAGGACATTCATTTGGGCAGAAGAGGGACCAGTCTTCGTCAGC 332678 Query 114790 CTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCG 114849 ||||||||||||||||| | || ||||| | ||| |||| | || ||| || Sbjct 332679 TTCAACACGCTTCATGAACAAATCATTAATCCACAAAGCATAGAACAAGTCACGAGCACG 332738 Query 114850 AGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCA 114909 | ||||||| | ||| || ||| ||||||||||| | | || |||||||| Sbjct 332739 AACTTCTTCCTTCCCAGTGTTCTTCTTCAAATCCAAAAAGTCAAAAACGTCAGCGTGCCA 332798 Query 114910 CGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCT 114966 |||||||| ||| || || | | ||| ||| | |||| | || | || || | Sbjct 332799 CGGTTCCAAGTAGACGGCAAAAGCACCCGGACGCTTATTACCACCTTGATCAACGTAACG 332858 Query 114967 CGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCC 115026 || ||| ||| | || |||||||| |||| | ||||| ||||| ||||| || || Sbjct 332859 AGCCGTGTTATTGTAAACACGAAGCATGGGAACAAGACCATTGGATTGACCATTCGTGCC 332918 >seq1526 Length=132622 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || || ||||| ||||||||| ||| |||||||| |||||| || || Sbjct 118691 GGCAAAATCACAATGAAGACCTTCGTCACGGCTGATTAGTTCATTGGAGAAGGTCAAACC 118750 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||| | || |||||||||||||||||||| ||| ||||||||| || |||||||| Sbjct 118751 GGGCATCAACCCGCGCTTCTTCAACCAGAAAATGGCAGCAAATGAACCGGAAAAGAAGAT 118810 Query 126166 TCCCTCCAC 126174 || ||||| Sbjct 118811 ACCTTCCAC 118819 >seq1445 Length=178852 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 172797 ACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAA 172856 |||| ||||| || || || ||||| | | ||||| ||||| ||| | ||||| || Sbjct 43730 ACTTACCACGAAGCGGAAAAACACCCCAATTGTCACGGCCAACAACACTTAAACCAGAAA 43671 Query 172857 CTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTG 172916 | || | | ||| || ||||| || ||||||| ||||||||||||||| | | || Sbjct 43670 CGGCCAAAGCCTTGGCTGAATCTCCTTCCGTCAAGATGAGCGTACACTTGGCGGCATGAC 43611 Query 172917 CCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTTGCGGG 172976 || || || ||||| || || || | |||| |||||| | || || || || Sbjct 43610 GAGTACCGGCATTGTTGGCGTCATCAAGTTTGGAAATACCGGAAAGACGAGATTTCTTGG 43551 Query 172977 CACCATCTGTCTTCTT 172992 |||| || |||||||| Sbjct 43550 CACCGTCAGTCTTCTT 43535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597337434118200