Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1775 150 2e-31 seq1422 140 3e-28 seq1301 131 2e-25 seq1110 116 4e-21 seq1355 100 3e-16 >seq1775 Length=332822 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| | | ||| || || | |||||||||||| ||||| ||||| ||||| Sbjct 274999 ACCGCCACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCTGC 274940 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| ||||||||||| ||| | || || |||||||||||||| || Sbjct 274939 CAAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGG 274880 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || ||||| || || ||| || | |||| || ||||| Sbjct 274879 AATCCCTTCCTTGTCCTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCAC 274820 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||||||| |||| || || |||||||| |||||||| Sbjct 274819 GTCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCATTTT 274769 >seq1422 Length=277306 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || |||||||| | ||| || || || | ||| || || || ||||| ||||| || || Sbjct 271549 CCTCCGCGCAAACGAAGTACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAGCC 271490 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || ||||||||||| ||| | || || |||||||| || || ||| Sbjct 271489 AAAGTACGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGGA 271430 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || || || || |||||||||||| || | | ||| || ||||| Sbjct 271429 ATGCCTTCCTTGTCCTGGATCTTTTGCTTTACATTGTCGATCGAATCCGAGGGCTCCACG 271370 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || |||||||| ||||| ||||||||||| Sbjct 271369 TCCAGCGTAATCGTCTTACCAGTCAAAGTCTTTACAAAAATTTGCAT 271323 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || |||||||| | |||||| || || | ||| | || || || || ||||| || || Sbjct 271321 CCTCCGCGCAAACGAAGCACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAGCC 271262 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || ||||||||||||||| | || || |||||||| || || ||| Sbjct 271261 AAAGTACGACCGTCCTCGAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTGGA 271202 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || || || || ||||||||||| || | | || | ||||| Sbjct 271201 ATTCCTTCCTTGTCCTGGATCTTTTGCTTTACGTTATCGATCGAGTCCGAAGGTTCCACG 271142 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | ||| | ||||| || |||| ||| || ||||||||||||||| Sbjct 271141 TCCAAAGTGATCGTCTTACCAGTCAGAGTCTTGACGAAAATTTGCATT 271094 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 64280 GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATT 64339 ||||| |||| || ||||||||||| ||| | || || |||||||| || || ||||| Sbjct 271714 GTGCGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGGAATG 271655 Query 64340 CCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 ||||| || || || || |||||||||||| Sbjct 271654 CCTTCCTTGTCCTGGATCTTTTGCTTTACA 271625 >seq1301 Length=515170 Score = 131 bits (144), Expect = 2e-25 Identities = 392/603 (65%), Gaps = 13/603 (2%) Strand=Plus/Plus Query 153648 CAATTTCGACATTCGATGCTGCATTTG-TCCACGGTAAATGCGATTGCATCCGCGGCCGG 153706 ||||||| ||||| | || | |||| || || ||||| ||| ||||| | ||||| Sbjct 331424 CAATTTCTTCATTCAAGGCAG--TTTGATCAACCGTAAACTTGATAGCATCAACAGCCGG 331481 Query 153707 TTTAGTTCGCAAATAATACATGCCGGTTTTCAAACCACGTTTCCAAGTGTGCATGTGCAC 153766 ||| ||||| |||||||| || || ||||||||| | |||||| || | |||| Sbjct 331482 ACGAGTACGCAAGTAATACATACCAGTCTTCAAACCAAGCTTCCAACCGTAAAAATGCAT 331541 Query 153767 GCTAGTTAATAACGCGAAACTGGGCTGCGCTATAAACACGTTAAACGACTGGCTCTGATC 153826 ||| || || || | || | || || | ||| || || || ||||| Sbjct 331542 TGAAGTCAACTTCGAAAAGGTTGGTTCGGCAATGTGAATGTTCAAACTTTGACTTTGATC 331601 Query 153827 GATGAAAGCGCCGCGATCGGCCGCCATGTCAATCAAGTTTTTACTGCTCATTTCCCACAC 153886 |||||||| || ||||| || |||| |||||| | | ||| |||||||| || Sbjct 331602 AATGAAAGCACCACGATCAGCAGCCAAGTCAATAATGACTTTTTGAGAAATTTCCCAAAC 331661 Query 153887 AGTTTTGTAGACGGCTTTAATGTCGTCGGGTATGCGATCAATTTTCTGCACACTGCCTCC 153946 || ||||| | | | || | || | || |||| ||| || || || || || Sbjct 331662 TGTCTTGTACAAGTCCTTCAATTCTTGCGGGATGCTGGGAATCTTTTGTACTGAACCACC 331721 Query 153947 GGCCGCTATAATGGAATTGCGCATGTGGTCGTCGTACAA-----ATTTAGTCGACATAAA 154001 || || || ||| ||| |||| || | |||| ||| |||| ||| Sbjct 331722 CGCAGCAATGATGCGATTCTTCATGGATTCATTCCACAATCCCAATTCAGTC-----AAA 331776 Query 154002 TCTTCAACCAAGTGCTGGTTAATTACTTGAAAATCGCCGGCCAATACGCGGCGCACATAC 154061 || | | ||||| || || | | ||| || || || || || || || || || Sbjct 331777 TCCTTCATCAAGTATTGATTGACAATTTGGAATTCACCAGCTAAAACACGACGAGTGTAA 331836 Query 154062 AAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCT 154121 | ||| ||||| ||||| || |||| |||| || | ||||||| |||| || Sbjct 331837 ATGTTGGAAGTGAAAGGCTCAAAGCATTCATTGTAACCAAGAATTTGAGAGGTAGAAGCA 331896 Query 154122 GTGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTT 154181 || ||||| || | ||||| || || || | ||| |||| | ||| || Sbjct 331897 GTCGGCATGGGAGCAAGTAACAAGGAATTACGAACACCATGTTCAGAAATCTTAGCCTTC 331956 Query 154182 AAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACA 154241 ||| ||| ||||| |||||||| || ||| ||| ||||||||||| |||||||||||| Sbjct 331957 AAAGCTGACCAATCCCACAAGTCGGAAGGGGTCACATTCCACATGTCATATTGCAAAACA 332016 Query 154242 CCC 154244 ||| Sbjct 332017 CCC 332019 >seq1110 Length=486086 Score = 116 bits (128), Expect = 4e-21 Identities = 141/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 |||||||||||||| || || | | || | |||||||| |||||||| ||| | || Sbjct 256290 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 256231 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 | ||||||||||| || ||||| ||||| || || || ||||| ||||||||| || Sbjct 256230 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGTCA 256171 Query 64376 A--CTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | |||| | || | ||||| || | || | ||||||||| ||||| || || || | Sbjct 256170 ATGCTGTCTGAC--GGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAA 256113 Query 64434 AAATTTGCAT 64443 |||| ||||| Sbjct 256112 AAATCTGCAT 256103 >seq1355 Length=184863 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| || |||| ||||| || || || |||||||| || | || || |||| || Sbjct 90673 CACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTC 90732 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | ||||||||| ||| |||| || || |||||||| || ||||||||||| || || || Sbjct 90733 CAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTG 90792 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||||| || || | | || | || || || | ||| | ||||| Sbjct 90793 AATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTGTCTT 90852 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || |||||||| || |||||||| ||||| Sbjct 90853 TCCCGTCAAAGTCTTGACGAAAATCTGCAT 90882 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTT-TGAATGTTGTAATCTGCGACGGTGCGCGCGTCTT 64292 ||| || |||| ||||| || ||| || |||||||| || | || || |||| | Sbjct 90901 CACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTCGCTCAAAGTACGGCCGTCCT 90960 Query 64293 CAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTT 64352 | | ||||||||| ||| |||| || || |||||||| || ||||||||||| || || | Sbjct 90961 CCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCT 91020 Query 64353 GTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412 | || || ||||| || || | | || | || || || | ||| | |||| Sbjct 91021 GAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACGTCAAGAGTGATTGTCT 91080 Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || |||||||| || |||||||| ||||| Sbjct 91081 TTCCCGTCAAAGTCTTGACGAAAATCTGCAT 91111 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/215 (70%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTG-CGACGGTGCGCGCGTCTT 64292 ||| || |||| ||||| || || || |||||||| || | | | | || |||| | Sbjct 91130 CACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTTACGGCCGTCCT 91189 Query 64293 CAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTT 64352 | | ||||||||| ||| |||| || || |||||||| || ||||||||||| || || | Sbjct 91190 CCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCT 91249 Query 64353 GTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412 | || || ||||| || || | | ||| | || || || | ||| | |||| Sbjct 91250 GAATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGCTCTACGTCGAGAGTGATTGTCT 91309 Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTA 64447 | || |||| || ||||| ||||| |||||| || Sbjct 91310 TTCCCGTCAGCGTCTTTACAAAAATCTGCATTGTA 91344 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| || |||| ||||| ||||| || |||||||| || | || || |||| || Sbjct 90445 CACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTC 90504 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | ||||||||| ||| |||| || || |||||||| || ||||||||||| || || | Sbjct 90505 CAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTA 90564 Query 64354 TATT--TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 ||| || ||||| || || | | || || || || || | ||| | ||| Sbjct 90565 AATTTCTTCTGCTTCAC-TTGTCGATCGAGTCGGAAGC-TCAACGTCAAGAGTAATAGTC 90622 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||||||| || || ||||| ||||| Sbjct 90623 TTTCCCGTCAAAGTCTTGACAAAAATCTGCAT 90654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499631278362600