Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq1612 172 8e-38 seq1435 118 2e-21 >seq1612 Length=217819 Score = 172 bits (190), Expect = 8e-38 Identities = 490/734 (67%), Gaps = 33/734 (4%) Strand=Plus/Plus Query 41379 AGCAGCTTGGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGC 41438 |||| || |||||||| || | |||||||||||||| || | ||| |||| || | Sbjct 127422 AGCACCTGGGCACGCTCGGGACGGGCAACCACTTCATCGAGGTCTGCCTGGATGAGGGGG 127481 Query 41439 AAGACGTGTGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTC 41498 ||||||| ||||||||||| || |||||||| ||||||||| |||||| Sbjct 127482 GCTTCGTGTGGTTCATGCTGCATTCGGGCTCGCGCGGCGTGGGCAACGCGATCGGCACGA 127541 Query 41499 ACTACATCGAGCGTGCGCAGAAGGAGTGCGGCATGTGGCA-CAG--CAGCCTGCCGCACA 41555 | |||||||| ||| ||||||| ||| ||| ||| ||| || |||||| | | Sbjct 127542 TGTTCATCGAGCTGGCGAAGAAGGAC-GCG--ATGCAGCATCAGGCCAACCTGCCCGATA 127598 Query 41556 ACGATCTCGCGTTCTTCCCTGAGGACACTCCGGGCTTCAATCACTACGTCCTGTCCATGC 41615 ||||||| | |||| || | | | | |||| ||||||| | | || Sbjct 127599 CGAATCTCGCCTACTTCGAGGAAGGCGCGAAGTACTTCGGCGACTACGTGCGCGCGGTGA 127658 Query 41616 TGTGGGCGCAGGACTTCGCTCGGCAGAATCGTGCGGTGATGTTGCAGATCGTGATCCAAG 41675 ||||||||| | ||||| | ||||| | | ||||| ||| ||| ||| | Sbjct 127659 GCTGGGCGCAGAAGTTCGCCGAGACCAATCGCGAGCTGATGATGCGCCGCGTCATCG--G 127716 Query 41676 CGCTGCGTCG----TCATCTGCCGGCC-TTCGAG-CTGACGGAAGAGGCGGTGAACTGCC 41729 ||| ||| | | ||| | ||| |||||| | || |||||||||||||||| Sbjct 127717 CGCGGCGAGGAAGGTGATCGCCAAGCCGTTCGAGGCCCACATC-GAGGCGGTGAACTGCC 127775 Query 41730 ACCACAACTATTGTG-AGCAGGAGAACCACTTCGGGCGCAACGTGTGGGTCACGCGCAAG 41788 |||||||||| ||| || |||||| ||||||||| | |||||| || || |||||| Sbjct 127776 ACCACAACTA-CGTGCAGAAGGAGACCCACTTCGGCCAGGACGTGTTCGTGACCCGCAAG 127834 Query 41789 GGTGCGGTTCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGATCCATGGGTACGAAG 41848 || ||||| | || | | | | ||||||||||||| || |||||| || Sbjct 127835 GGCGCGGTGAGCGCGAAGCAGGGCCAGATGGGGATCATTCCCGGCAGCATGGGCGCGCGC 127894 Query 41849 TCGTACATCGTCAAGGGCAAGGGCAATCCGCA----TTCGTACTGCTCGTGCAGTCACGG 41904 |||||||| ||||||||||| || | |||| || || ||| ||||| Sbjct 127895 AGCTACATCGTGCGCGGCAAGGGCAACGCGGAGAGCTTCG-ACAGC---TGCTCGCACGG 127950 Query 41905 GGCAGGACGCCGTATGTCGCGCACCGAGGCCGTCAAG---CGATTCACCGTCGAAGACC- 41960 ||| || ||| ||| || ||||| || |||| || ||||| | | |||| Sbjct 127951 GGCCGGCCGCACGATGAGCCGTACCGAAGC---CAAGCGTCGTTTCACGCTGAAGGACCA 128007 Query 41961 TCGTGCAGCAGACGCAGGGTGTTGAATGCCCGAAGACCAAGGAAGTGCTGGATGAAATCC 42020 || || || ||| | || || || |||| ||| | |||| || | || || |||| Sbjct 128008 GCGCGCGGC-GACCGAAGGGGTGGAGTGCCGCAAGGACGAGGACGTCATCGACGAGATCC 128066 Query 42021 CGGCCGCGTACAAGGACATCGATCAGGTGATGCTTGACCAAAGCGATCTGGTGGAAGTCG 42080 || || |||||||||||||| ||||||| | || || |||||||| |||| Sbjct 128067 CGATGGCCTACAAGGACATCGACGCGGTGATGGCGGCTCAGCAAGACCTGGTGGAGGTCG 128126 Query 42081 TTCATACGCTGAAG 42094 | || ||||| ||| Sbjct 128127 TGCACACGCTCAAG 128140 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/113 (79%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 40999 GATGCCGGACGCGCACGCAGGCATCGGCAGCACGGTAGGATCGGTGATCGCTACGC--AA 41056 |||||| || | |||| ||||||||| ||||| || ||||||||| | |||| || Sbjct 127090 GATGCCCGATGTCCACGTGGGCATCGGCGCAACGGTGGGGTCGGTGATCCCGACGCTGAA 127149 Query 41057 GGTGCCATCATTCCGGCGGCGGTGGGCGTGGACATCGGCTGCGGCATGGTGGC 41109 || | ||||| ||||| ||||| || ||||||||||||||||| ||| |||| Sbjct 127150 GG--CAATCATCCCGGCCGCGGTCGGGGTGGACATCGGCTGCGGGATGATGGC 127200 >seq1435 Length=478137 Score = 118 bits (130), Expect = 2e-21 Identities = 79/87 (91%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 186291 GACAAAGACTTGGAGCGGGCGACGAGACTCGAACTCGCGACATCTTGCTTGGAAGGCAAG 186350 ||| || ||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 56712 GACCAAAACT-GGAGCGGGCGACGAGGTTCGAACTCGCGACATCTTGCTTGGAAGGCAAG 56770 Query 186351 AACTCTACCAACTGAGCTACGCCCGCA 186377 |||||||||||||||||| |||||| Sbjct 56771 TGCTCTACCAACTGAGCTACACCCGCA 56797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739867976781000