Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1342 181 1e-40 seq312 82.4 8e-11 >seq1342 Length=132421 Score = 181 bits (200), Expect = 1e-40 Identities = 277/395 (70%), Gaps = 0/395 (0%) Strand=Plus/Plus Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038 || |||| |||| |||||| | |||||| ||| || |||| || || || |||||| Sbjct 1901 GGCATTTATGACACGCTCAAGCAATGTGCGTGCATTTCGAAATGGGCCGGCGGGATCGGG 1960 Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098 |||||| | ||| || | ||||||| ||||||||| || || || || | || Sbjct 1961 ATCAGTATGCACAACATTCGTGCCACCAACAGCTACATCCGAGGCACGAACGGGTCGTCG 2020 Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGT 94158 || ||| || | || ||| | || ||||| || || ||||||| ||||| || || ||| Sbjct 2021 AATGGCATCATTCCAATGTTGCGCGTCTTTAATGACACGGCGCGGTACGTCGATCAAGGT 2080 Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAG 94218 || |||| | || || || || || ||||||| |||||||||||||| || ||| Sbjct 2081 GGCGGGAAACGCAAAGGCTCGTTTGCCATCTATCTAGAGCCCTGGCACGCTGATGTGTTT 2140 Query 94219 GCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTC 94278 | || | || |||| || |||||||||||||| || | | || | || | || Sbjct 2141 GAATTTCTAGAGTTGCGGAAAAACCACGGCAACGAGTTGCATCGTGCTCGGGATTTGTTT 2200 Query 94279 TACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGT 94338 | || | ||||| ||||| || |||||||| ||||| || || | | |||||| Sbjct 2201 TTTGCCTTGTGGGTCCCAGATCTCTTTATGAAGCGCGTGGAAGCCAATGGCACGTGGAGT 2260 Query 94339 CTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 || ||||||||||| ||| || || |||| ||| Sbjct 2261 CTCTTTTGTCCCAACGAAGCGCCGGGTCTGTACGA 2295 >seq312 Length=309945 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| |||| | || || |||||||||||||| || || || || ||| | ||||||||| Sbjct 18986 AACTCGCTCTTGGTCGCGCCCATGCCCACGGCGTCGACCGCTCAAATCTTGGGCAACAAC 19045 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAA 95183 || ||| | || ||||| || |||||| ||||||| Sbjct 19046 GAATCGATTGAGCCCTTTACGTCCAACATGTACAA 19080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494709811553400