Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1422 134 1e-26 seq1355 113 4e-20 seq1110 105 7e-18 seq1775 102 8e-17 seq1301 98.7 1e-15 seq368 87.8 2e-12 >seq1422 Length=277306 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||||||| | || | || | | |||||||| ||||| |||||||| Sbjct 271550 GCCTCCGCGCAAACGAAGTACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAGC 271491 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| ||||||||| || || || | | |||| |||||||| || || || || Sbjct 271490 CAAAGTACGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGG 271431 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| ||||| |||| ||||| | | | || | | ||||| Sbjct 271430 AATGCCTTCCTTGTCCTGGATCTTTTGCTTTACATTGT-CGATCGAATCCGAGGGCTCCA 271372 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 | || | ||| | ||| |||||||||| ||| ||||||||||| |||||| || Sbjct 271371 CGTCCAGCGTAATCGTCTTACCAGTCAAAGTCTTTACAAAAATTTGCATGCCT 271319 Score = 109 bits (120), Expect = 5e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 138422 ACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAAT 138481 ||||||| || || |||||||| || |||||| ||||||||| || || |||| | Sbjct 271287 ACTCCTTCTGTATATTGTAGTCAGCCAAAGTACGACCGTCCTCGAGCTGCTTGCCGGCAA 271228 Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATT 138541 | || |||||||| || || || || || ||||| ||||| ||| ||||| |||| | Sbjct 271227 ATATCAGACGCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTTACGT 271168 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 || | | ||| | | ||||| || | || | ||| |||||||||||||| || | Sbjct 271167 TATCGATCGAGTCCGAAGGTTCCACGTCCAAAGTGATCGTCTTACCAGTCAGAGTCTTGA 271108 Query 138602 CAAAAATCTGCAT 138614 | ||||| ||||| Sbjct 271107 CGAAAATTTGCAT 271095 >seq1355 Length=184863 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| |||||| || | || | | | |||||||| || |||||||||||||| Sbjct 90655 GCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 90714 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| |||||| | || || || | | | |||||||| || ||||| || || Sbjct 90715 CAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGG 90774 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| || || || || | | || | | ||||| | ||| || Sbjct 90775 AATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAAC 90834 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || | || | || || || |||| ||| || || |||||||||||| || Sbjct 90835 GTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATGCCT 90886 Score = 113 bits (124), Expect = 4e-20 Identities = 163/229 (71%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| |||||| || | || | | | |||||||| || |||||||||||||| Sbjct 91112 GCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 91171 Query 138447 CATAGT-ACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 || ||| ||| |||||| | || || || | | | |||||||| || ||||| || | Sbjct 91172 CAAAGTTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTG 91231 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | || ||||| ||||| || || || || | | || | | ||| | | ||| | Sbjct 91232 GAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGCTCTA 91291 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | |||| || | || || || ||||| || ||||||||||||||||| Sbjct 91292 CGTCGAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCAT 91340 Score = 111 bits (122), Expect = 2e-19 Identities = 165/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTT-TGAATGTTGTAGTCGC 138445 ||| || |||| |||||| || | || | | | ||||||||| || ||||||||||||| Sbjct 90883 GCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTCGC 90942 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 ||| |||||| |||||| | || || || | | | |||||||| || ||||| || | Sbjct 90943 TCAAAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTG 91002 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | || ||||| ||||| || || || || | | || | | ||||| | ||| | Sbjct 91003 GAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAA 91062 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 | || | || | || || || |||| ||| || || |||||||||||| || Sbjct 91063 CGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATGCCT 91115 Score = 100 bits (110), Expect = 3e-16 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | || | | ||||| || || ||||||||||||||| Sbjct 90428 CCACCACGCAGGCGCAACACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTC 90487 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| |||||| | || || || | | | |||||||| || ||||| || || Sbjct 90488 AGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGA 90547 Query 138508 ATACCTTCTTTGTCGGTGATT--TTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| || || || | ||| || | | ||||| | ||| | Sbjct 90548 ATTCCTTCCTTGTCCTAAATTTCTTCTGCTTCACTTG-TCGATCGAGTCGGAAG-CTCAA 90605 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 | || | || | || || || |||| ||| || ||||||||||||||| || Sbjct 90606 CGTCAAGAGTAATAGTCTTTCCCGTCAAAGTCTTGACAAAAATCTGCATGCCT 90658 >seq1110 Length=486086 Score = 105 bits (116), Expect = 7e-18 Identities = 154/211 (73%), Gaps = 9/211 (4%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGT--ACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 ||||||||||||||||||| | || ||| ||| || || ||||| || || | | | Sbjct 256292 CCTTTTGAATGTTGTAGTC-CGCA-AGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAA 256235 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| | |||||| ||||| || || || ||||| ||||| |||||| || |||| ||| Sbjct 256234 GATCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATT 256175 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 || | | | |||| | || ||||| || | ||| | || || || |||| || || | Sbjct 256174 GT-CAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGA 256116 Query 138602 CAAAAATCTGCATGGCT---TATAATATTAT 138629 |||||||||||||| || |||| ||| || Sbjct 256115 CAAAAATCTGCATGACTCCCTATAGTATGAT 256085 >seq1775 Length=332822 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| |||||| || | || | | || || || ||||| |||||||| | Sbjct 274998 CCGCCACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCTGCC 274939 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || ||||| || || || | | |||| |||||||| ||||| || || Sbjct 274938 AAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGA 274879 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||||| ||||| | ||||| | | | | || | | |||||| Sbjct 274878 ATCCCTTCCTTGTCCTGAATTTTCTGTTTGACATTGT-CAATGCTATCCGAGGGCTCCAC 274820 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || || ||||| || || || ||||||||||| Sbjct 274819 GTCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 274772 >seq1301 Length=515170 Score = 98.7 bits (108), Expect = 1e-15 Identities = 228/344 (66%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 153018 ATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTG 153077 |||||||| || ||||| | ||| || || || || || || || | || | ||| Sbjct 331783 ATCAAGTATTGATTGACAATTTGGAATTCACCAGCTAAAACACGACGAGTGTAAATGTTG 331842 Query 153078 CTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGC 153137 ||||||||| |||||| |||| || | || || ||||||| || | || |||||| Sbjct 331843 GAAGTGAAAGGCTCAAAGCATTCATTGTAACCAAGAATTTGAGAGGTAGAAGCAGTCGGC 331902 Query 153138 ATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCC 153197 ||| || | ||||| ||||| || | || || | ||| | ||||||| || Sbjct 331903 ATGGGAGCAAGTAACAAGGAATTACGAACACCATGTTCAGAAATCTTAGCCTTCAAAGCT 331962 Query 153198 TGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGA 153257 ||||||||||| | || || ||| | ||||||||||| || || || || || Sbjct 331963 GACCAATCCCACAAGTCGGAAGGGGTCACATTCCACATGTCATATTGCAAAACACCCTTG 332022 Query 153258 CTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTA 153317 || | || || || | | || ||| || || ||| |||| ||| || | Sbjct 332023 CTCACAGGGCTACCCGGGTAAGTTTGATAGTGTCCTTCAATTTGAGCCAATTCACAAGAA 332082 Query 153318 GCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATT 153361 || || | || |||||||| ||||| || |||||| ||||| Sbjct 332083 GCTTCCAAGGCACCATAGTAGATGGTCTCAAAGATTTGCTTATT 332126 >seq368 Length=262043 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 52614 GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGC 52673 || || ||||| || ||| | ||||| | | | |||| |||||||||||| | ||| Sbjct 28225 GATGCTGTGGCGATTGAACACGAGTTCGTGCGTGACTCGCTCCCGGTCGAGCTGATTGGC 28166 Query 52674 ATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 52733 |||||| || ||||||| |||||| || |||||||| ||||||||| | | Sbjct 28165 ATGAACTCGGGCCTCATGTGCCTGTACATTGAATTTGTGGCTGATCGTCTGCTTTACTCG 28106 Query 52734 CTCGG-GCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTC 52792 || || | | || ||| || | | || || || || || | ||| ||| || || Sbjct 28105 CTGGGAGTATCC-AAGATCTACCATGCAAAGAACCCATTCGATTGGATGGACATGATCTC 28047 Query 52793 GCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || |||||||||| |||||||| ||||| || || || || || Sbjct 28046 TCTCCAGGGCAAGACAAACTTTTTTGAGAAACGCGTTGGAGAATA 28002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496248969898800