Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1355 105 5e-18 seq1775 87.8 1e-12 seq1422 87.8 1e-12 seq1110 82.4 5e-11 >seq1355 Length=184863 Score = 105 bits (116), Expect = 5e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | || || | ||||| || || ||||| || |||||||| ||||| Sbjct 90428 CCACCACGCAGGCGCAACACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTC 90487 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | |||| || || || |||||||| | || | ||| || ||||| |||| Sbjct 90488 AGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGA 90547 Query 15070 ATTCCTTCCTTGTCACAAATTT-TGCTTTTTACAATT-TCTATAGTATCGCTATTTTCTA 15127 |||||||||||||| |||||| | || || || || || || | ||| | || | Sbjct 90548 ATTCCTTCCTTGTCCTAAATTTCTTCTGCTT-CACTTGTCGATCGAGTCG-GAAGCTCAA 90605 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| | ||||| || || || |||| ||| || |||||||| ||||| Sbjct 90606 CGTCAAGAGTAATAGTCTTTCCCGTCAAAGTCTTGACAAAAATCTGCAT 90654 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| || |||| | || || | |||||||| || || || || |||||||| |||| Sbjct 90654 TGCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGC 90713 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| | | |||| || || || |||||||| | || | ||| || ||||| || Sbjct 90714 TCAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTG 90773 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||||||||| ||| || || || | || || | ||| | || | Sbjct 90774 GAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAA 90833 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| | || || || || || |||| ||| || || ||||| ||||| Sbjct 90834 CGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 90882 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| || |||| | || || | |||||||| || || || || |||||||| |||| Sbjct 91111 TGCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGC 91170 Query 15008 TGAGAATTCTCGC-GTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 | | | || || ||| || || || |||||||| | || | ||| || ||||| | Sbjct 91171 TCAAAGTTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGT 91230 Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 ||||||||||||||||| ||| || || || | || || | || ||| Sbjct 91231 GGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGATGGCTCT 91290 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| | || || || || || ||||| || ||||||||||| ||||| Sbjct 91291 ACGTCGAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCAT 91340 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTT-TGTATGTTGTAATCG 15006 |||| || |||| | || || | |||||||| || || ||| || |||||||| ||| Sbjct 90882 TGCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTCG 90941 Query 15007 CTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 || | | | | |||| || || || |||||||| | || | ||| || ||||| | Sbjct 90942 CTCAAAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGT 91001 Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 ||||||||||||||||| ||| || || || | || || | ||| | || Sbjct 91002 GGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCA 91061 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| | || || || || || |||| ||| || || ||||| ||||| Sbjct 91062 ACGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 91111 >seq1775 Length=332822 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || ||||| || || ||||| || | | | | | ||||| | || Sbjct 274974 TGCAGCGTCGATTCTTTCTGAATATTGTAGTCTGCCAAAGTCCGGCCATCTTCGAGCTGC 274915 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 |||||||| | |||| |||||| |||||| |||||| ||||||||||| |||||| Sbjct 274914 TTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTGTCCTGAATTTTC 274855 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || |||| || ||||| | |||||||| || || ||| Sbjct 274854 TGTTTGACATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAATGGTCTTGCCCGTC 274795 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 || || || || ||||| ||||| || Sbjct 274794 AGGGTCTTGACGAAAATCTGCATTTT 274769 >seq1422 Length=277306 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| || ||||| | | || | || || ||| | || || ||||| ||||| || Sbjct 271323 TGCCTCCGCGCAAACGAAGCACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAG 271264 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | | | | |||| || | || ||||| || |||||| |||||| || || || Sbjct 271263 CCAAAGTACGACCGTCCTCGAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTG 271204 Query 15068 GAATTCCTTCCTTGTC--ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 |||||||||||||||| | |||||| ||||| | || || | || | ||| Sbjct 271203 GAATTCCTTCCTTGTCCTGGATCTTTTGC--TTTACGTTATCGATCGAGTCCGAAGGTTC 271146 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || || || ||||| |||||||| || || ||||||||||| Sbjct 271145 CACGTCCAAAGTGATCGTCTTACCAGTCAGAGTCTTGACGAAAATTTGCAT 271095 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| || ||||| | | || | || || ||||| || || || || ||||| || Sbjct 271551 TGCCTCCGCGCAAACGAAGTACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAG 271492 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | | | | |||| || | || |||||||| | |||| |||||| || || || Sbjct 271491 CCAAAGTACGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTG 271432 Query 15068 GAATTCCTTCCTTGTCACAAAT--TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 |||| ||||||||||| || |||||||| ||| | || || | ||| || Sbjct 271431 GAATGCCTTCCTTGTCCTGGATCTTTTGCTTT--ACATTGTCGATCGAATCCGAGGGCTC 271374 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| | ||||| || ||||| |||| ||| ||||||||||||||||| Sbjct 271373 CACGTCCAGCGTAATCGTCTTACCAGTCAAAGTCTTTACAAAAATTTGCAT 271323 >seq1110 Length=486086 Score = 82.4 bits (90), Expect = 5e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| | ||| |||||||| | ||||||||||| ||||| ||||| ||||||||| Sbjct 256257 TCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTG 256198 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || ||||| |||||| | || || | || ||| ||||| | |||||| Sbjct 256197 TCCTGGATTTTCTGCTTTACATTGTCAATGCTGTCTGACGGTTCCACGTCCAGCGTAATG 256138 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || |||| || || |||||||| ||||| Sbjct 256137 GTCTTGCCCGTCAACGTCTTGACAAAAATCTGCAT 256103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357382569877025