Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1422 129 6e-25 seq1775 118 1e-21 seq1110 95.1 1e-14 seq1355 93.3 4e-14 >seq1422 Length=277306 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| || || | |||| || | ||||||||| || ||||||||||| || || Sbjct 271549 CCTCCGCGCAAACGAAGTACCAGGTGGAGCGTAGACTCCTTCTGAATATTGTAGTCAGCC 271490 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| || ||||| |||||| ||||||||||| || || Sbjct 271489 AAAGTACGACCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGTGGA 271430 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||||||| ||| || ||||| | | |||| | |||| ||| || Sbjct 271429 ATGCCTTCCTTGTCCTGGATCTTTTGCTTTACATTGTCGATCGAATCCGAGGGCTCCACG 271370 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || | || | ||| || || |||| ||| ||||||||||| |||||| || Sbjct 271369 TCCAGCGTAATCGTCTTACCAGTCAAAGTCTTTACAAAAATTTGCATGCCT 271319 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| || || | ||||| || | |||| |||| || || |||||||| || || Sbjct 271321 CCTCCGCGCAAACGAAGCACCAGGTGGAGCGTACACTCCTTCTGTATATTGTAGTCAGCC 271262 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| || || || | |||| ||||||||||| || || Sbjct 271261 AAAGTACGACCGTCCTCGAGCTGCTTGCCGGCAAATATCAGACGCTGCTGATCAGGTGGA 271202 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| ||| || ||||| | | |||| | ||||| | || || Sbjct 271201 ATTCCTTCCTTGTCCTGGATCTTTTGCTTTACGTTATCGATCGAGTCCGAAGGTTCCACG 271142 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| || || |||||||| || || ||||| ||||| Sbjct 271141 TCCAAAGTGATCGTCTTACCAGTCAGAGTCTTGACGAAAATTTGCAT 271095 >seq1775 Length=332822 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||||||| | || | ||| || ||||| ||||||||||| || ||| || || | Sbjct 274986 CGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCTGCCAAAGTCCGGCCA 274927 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| |||||||| ||||| || || || |||||| Sbjct 274926 TCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTG 274867 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| |||||||| |||| | || | | | |||| ||| || || | || | Sbjct 274866 TCCTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAATG 274807 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || || ||||||||||| Sbjct 274806 GTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 274772 >seq1110 Length=486086 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 |||||||| ||||| || | | | || ||| || || || || ||||| ||||| Sbjct 256290 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 256231 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| || || || ||||| ||||||||| |||||||||||| | | || Sbjct 256230 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGTCA 256171 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | || || || | || | || ||||| |||| || || |||||| Sbjct 256170 ATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAAAA 256111 Query 127106 ATCTGCATGGCT 127117 ||||||||| || Sbjct 256110 ATCTGCATGACT 256099 >seq1355 Length=184863 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | |||||||| | || | || |||||||| || || ||||| |||| Sbjct 90427 TCCACCACGCAGGCGCAACACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCT 90486 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || || || | ||| || ||||| | || | || ||||| || || || Sbjct 90487 CAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGG 90546 Query 127006 TATGCCCTCCTTGTCCGTGATTT--TCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || ||||||||| |||| ||||||| | |||| ||| | ||| | | ||| Sbjct 90547 AATTCCTTCCTTGTCCTAAATTTCTTCTGCTTCACTTGT-CGATCGAGTCGGAAG-CTCA 90604 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || || | || | || || || |||| ||| || ||||||||||||||| || Sbjct 90605 ACGTCAAGAGTAATAGTCTTTCCCGTCAAAGTCTTGACAAAAATCTGCATGCCT 90658 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||||||| | || | || ||||| || || || ||||| |||| || || || Sbjct 90668 CGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCG 90727 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | ||| || ||||| | || | || ||||| || || || || || |||||| Sbjct 90728 TCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTG 90787 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| || |||||||| | ||||| ||| | ||| | | ||| || || | || | Sbjct 90788 TCCTGAATCTTCTGCTTCACGTTGT-CGATCGAGTCGGAAGGCTCAACGTCAAGAGTGAT 90846 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || || || |||| ||| || || |||||||||||| || Sbjct 90847 TGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATGCCT 90886 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/221 (69%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTT-TGAATATTGTAATCGCCCATCGTGCGAGA 126957 |||||||| | || | || ||||| ||| || || ||||| |||| || || || Sbjct 90896 CGCAACACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTCGCTCAAAGTACGGCC 90955 Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 || || | ||| || ||||| | || | || ||||| || || || || || ||||| Sbjct 90956 GTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTT 91015 Query 127018 GTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCA 127076 |||| || |||||||| | ||||| ||| | ||| | | ||| || || | || | Sbjct 91016 GTCCTGAATCTTCTGCTTCACGTTGT-CGATCGAGTCGGAAGGCTCAACGTCAAGAGTGA 91074 Query 127077 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || || || |||| ||| || || |||||||||||| || Sbjct 91075 TTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATGCCT 91115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475487931759600