Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1301 228 7e-55 seq1355 105 6e-18 seq1342 84.2 2e-11 >seq1301 Length=515170 Score = 228 bits (252), Expect = 7e-55 Identities = 977/1527 (64%), Gaps = 24/1527 (2%) Strand=Plus/Minus Query 122832 GATTACGAATACAAATATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaaaaTC 122891 |||||| | ||||| || ||||| | ||| || | ||| | ||| |||| ||||| Sbjct 333290 GATTACAATTACAATTACTTTGGTTTCAAGACTCTTGAACGTGCATACTTGATGAAAATT 333231 Query 122892 GAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCAC 122951 | ||| |||| |||||| |||||| ||||||||||| || ||||| ||||| Sbjct 333230 AATGAACGCGTCGTTGAACGTCCTCAACACATGCTCATGCGTGTTTGCATAGGAATGCAC 333171 Query 122952 GGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACG 123011 || ||||| || || | ||| | ||| |||| ||| | |||| | ||| || Sbjct 333170 GGTACTGACATTGACTCGGCTATTGAATCGTACAATTTCATGAGTGAAAAGTATTTTACT 333111 Query 123012 CACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTT 123071 |||| ||||| | ||| ||||| || || ||||| ||||||| || || Sbjct 333110 CACGGTTCACCCACCCTCTTCCATGCCGGTACTAATCATCCTCAACTGTCTTCTTGCTTC 333051 Query 123072 TTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCG 123131 ||| | || || || ||| || ||||| ||||||||||| ||| || Sbjct 333050 TTGTTGACGATGTCTGATGACTCGATTGATGGTATTTATGAAACTTTAAAGACTTGTGCT 332991 Query 123132 TTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGA 123191 ||||||||||||| || || || || || ||||| | ||| || | | | | || | Sbjct 332990 TTGATTTCCAAATCTGCTGGTGGTATTGGTTTGAACATTCACAACATTCGTG-CTGCTGG 332932 Query 123192 AGCCG-CATCAGAAGCACCGACGG--AATCGCCTCCGGGCTCGAATCCATGCTGCGAGTT 123248 | ||| |||| | || |||| | || || | ||||||| || ||| Sbjct 332931 TTCGTACATTTCTGGCACGAATGGTCAATCCAAT--GGTCTTGTTCCCATGCTTCGTGTT 332874 Query 123249 TACAATAACGCCGTGCGGCACGTCGACCAGGGCGGCAAA---CGCAAAGGCGCGATGGCG 123305 ||||||||| | | || |||| || || || || || || || || | || Sbjct 332873 TACAATAACACGGCTCGTTACGTTGATCAAGGTGGTAATAAGCGTCCGGGTGCTTTTGCC 332814 Query 123306 ATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATG 123365 |||| | ||||||||||||| ||| || | || ||||| |||| || |||| Sbjct 332813 GTCTACTTGGAACCGTGGCACGCTGACGTTTTTGACTTTTTGGATTTGAAGAAGAACACT 332754 Query 123366 GGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTT 123425 ||| ||||||| || || || ||||| || ||||| ||| | |||||||| Sbjct 332753 GGGAAGGAAGAAGTTCGTGCTCGTGACTTGTTCTATGCTTTGTGGATTAATGATTTGTTC 332694 Query 123426 ATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGC 123485 ||| || || ||| |||| | ||||| ||| | || || || ||||| || Sbjct 332693 ATGAAGCGTGTTGAAGCTGACGAAGACTGGTCCCTCTTCTGCCCAAATGAATGTCCTGGT 332634 Query 123486 TTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGG- 123544 ||| || |||| || | | ||||| | | |||| | | ||||| ||||| Sbjct 332633 TTGTCTGATGTTTGGGGTGCTGAATTTGAAGCTCTTTACGAGAAGTACGAAAATGAAGGT 332574 Query 123545 CAAACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGT 123604 || | || || |||| || | | | | || |||| | ||| | ||||| Sbjct 332573 CATGCTCGTC-GTGTTGTTCGTGCTCAAAAGCTTTGGAATGCTATTTTGGAATCTCAAGT 332515 Query 123605 CGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAG 123664 ||||| || || || |||||||| ||||| || || ||||| || | |||||| Sbjct 332514 TGAAACTGGTACTCCTTACATGCTGTACAAGGATGCTTGCAATTCCAAGAGCAATCAACA 332455 Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGC 123724 ||||||||||| || |||||| ||| | || | |||||| | |||||| | | | Sbjct 332454 AAACTTGGGAACCATCAAATGTTCCAATTTGTGTACTGAAATTGTTGAATACTCGGCTCC 332395 Query 123725 CGATCAAGTGGCCGTGTGTAATTTGGCTTCGATT----TGCGTGAATCGTTG-CGTCGAA 123779 ||| | | || || || ||||||||||| ||| ||| || | ||| | || Sbjct 332394 TGATGAGATTGCTGTTTGCAATTTGGCTTCTATTGCTTTGCCTGCCT--TTGTCAAGGAT 332337 Query 123780 AACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTG 123839 || | ||||| ||||| || | |||| | | || ||| ||||| ||| Sbjct 332336 AAGAACACTTTTGATTTCAAAGAATTGAAACATGTTGCCAAGGTTGTCACCAAGAACTTG 332277 Query 123840 AACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAA 123899 || || || || || |||| ||| || | || | || ||| |||||| || Sbjct 332276 AATCGTATCATTGACGTCAATTATTACCCAGTTGAACAGGCTCGTCGTTCTAATATGCGT 332217 Query 123900 CACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATG 123959 || | || | || | || ||||||| || || || || || | || |||| ||| Sbjct 332216 CATCGTCCCATTGGTATTGGAGTTCAAGGATTAGCTGATGCTTTCATTCTGATGCGAATG 332157 Query 123960 CCGTACGAAAGCGACGAAGCAAAGTTGCTT-AATACGCAAATAGCCGAAACAATTTATTA 124018 || | || | || || || || |||| |||||| || || || || || Sbjct 332156 CCATTTGATTGTGAACGCGCTC-GTCAATTGAATAAGCAAATCTTTGAGACCATCTACTA 332098 Query 124019 CGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGC 124078 || || ||||| || || ||| | || ||||| | || || ||| |||| | Sbjct 332097 TGGTGCCTTGGAAGCTTCTTGTGAATTGGCTCAAATTGAAGGACACTATCAAACTTACCC 332038 Query 124079 GGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAA 124138 ||| ||||| | |||| ||| ||||||| || ||||||||||||| || || | | Sbjct 332037 GGGTAGCCCTGTGAGCAAGGGTGTTTTGCAATATGACATGTGGAATGTGACCCCTTCCGA 331978 Query 124139 TTTGTGGGACTGG--AGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCG 124196 |||||||| ||| ||| ||| || | | | || || || ||| | ||||| || Sbjct 331977 CTTGTGGGATTGGTCAGC-TTTGAAGGCTAAG-ATTTCTGAACATGGTGTTCGTAATTCC 331920 Query 124197 CTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCC 124256 |||| | || ||||||||| || | || |||||||| | || |||| |||| | Sbjct 331919 TTGTTACTTGCTCCCATGCCGACTGCTTCTACCTCTCAAATTCTTGGTTACAATGAATGC 331860 Query 124257 TTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTG 124316 || ||||| |||||| ||| | ||| || || || ||||| || || || ||| | Sbjct 331859 TTTGAGCCTTTCACTTCCAACATTTACACTCGTCGTGTTTTAGCTGGTGAATTCCAAATT 331800 Query 124317 ATAAATCATCATTTGGTGGACGACTTG 124343 | ||||| | ||| || | || ||| Sbjct 331799 GTCAATCAATACTTGATGAAGGATTTG 331773 >seq1355 Length=184863 Score = 105 bits (116), Expect = 6e-18 Identities = 165/232 (71%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | |||||| || || || || || ||||| ||||| || || ||| Sbjct 91110 ATGCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 91169 Query 45171 CTGACGGTTTTAGAA-TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 || | ||| | || ||||| || || || || | || | ||||||||||| || Sbjct 91170 CTCAAAGTTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGG 91229 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288 ||||| ||||| || || ||||| || || || | || | || | | ||| || | || Sbjct 91230 TGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCA-CGTTATCGATCGAGTCAGATGGCT 91288 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || |||||||| | || || || || || || ||||||||||| ||||| Sbjct 91289 CTACGTCGAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCAT 91340 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | |||||| || || || || || ||||| ||||| || || ||| Sbjct 90653 ATGCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 90712 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | || || ||||| || || || || | || | ||||||||||| || Sbjct 90713 CTCAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGT 90772 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || || ||||| || || || | || | || | | |||||||| ||| Sbjct 90773 GGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCGGAAGGCTC 90831 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | || || || || | ||| || || ||||| ||||| Sbjct 90832 AACGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 90882 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/232 (70%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTT-TGGATATTATAATC 45169 || ||||| || || | |||||| || || || || || |||||| ||||| || || || Sbjct 90881 ATGCCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTTCTGGATGTTGTAGTC 90940 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | || || ||||| || || || || | || | ||||||||||| || Sbjct 90941 GCTCAAAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGG 91000 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288 ||||| ||||| || || ||||| || || || | || | || | | |||||||| || Sbjct 91001 TGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCGGAAGGCT 91059 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| | || || || || | ||| || || ||||| ||||| Sbjct 91060 CAACGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 91111 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 |||| || || || | |||||| || || || || || || || ||||| || || |||| Sbjct 90426 TTCCACCACGCAGGCGCAACACAAGGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGC 90485 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | | || || ||||| || || || || | || | ||||||||||| || | Sbjct 90486 TCAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCAGGTG 90545 Query 45232 GAATGCCTTCTTTATCTTGAATT--TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 |||| ||||| || || | |||| || || || | | || | | |||||||| ||| Sbjct 90546 GAATTCCTTCCTTGTCCTAAATTTCTTCTGCTTCA-CTTGTCGATCGAGTCGGAAG-CTC 90603 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| || || || || | ||| || |||||||| ||||| Sbjct 90604 AACGTCAAGAGTAATAGTCTTTCCCGTCAAAGTCTTGACAAAAATCTGCAT 90654 >seq1342 Length=132421 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/242 (69%), Gaps = 13/242 (5%) Strand=Plus/Plus Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC---AAACGCAAA 123293 ||| |||| || | ||| || | | |||| ||||||| || || ||| ||||||||| Sbjct 2036 ATGTTGCGCGTCTTTAATGACACGGCGCGGTACGTCGATCAAGGTGGCGGGAAACGCAAA 2095 Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTT- 123352 ||| || | || ||||||||||| || ||||||| |||||||| || ||| || | || Sbjct 2096 GGCTCGTTTGCCATCTATCTAGAGCCCTGGCACGCTGATGTGTTTGAATTTCTAGAGTTG 2155 Query 123353 ---AAAACGCAACATGGGGGCG-GAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTAT 123408 |||| | || || || | | | | || || |||||||| | || || | Sbjct 2156 CGGAAAA---ACCACGGCAACGAGTTGCATCG--TGCTCGGGATTTGTTTTTTGCCTTGT 2210 Query 123409 GGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTC 123468 |||| || ||| | |||||| ||||| ||| | | ||| |||| ||| | |||| Sbjct 2211 GGGTCCCAGATCTCTTTATGAAGCGCGTGGAAGCCAATGGCACGTGGAGTCTCTTTTGTC 2270 Query 123469 CC 123470 || Sbjct 2271 CC 2272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451990967663400